Polyodon spathula (Mississippi paddlefish): 121314228
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Entry
121314228 CDS
T07273
Name
(RefSeq) transcriptional activator GLI3-like isoform X1
KO
K06230
zinc finger protein GLI3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121314228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121314228
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
121314228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_15
zf-C2H2
zf-H2C2_2
FOXP-CC
zf-C2H2_4
Zap1_zf1
DUF7565
Motif
Other DBs
NCBI-GeneID:
121314228
NCBI-ProteinID:
XP_041103194
LinkDB
All DBs
Position
4:16326797..16440400
Genome browser
AA seq
1579 aa
AA seq
DB search
MEAQSHTTTAAEKNKVQNSVVKGSTRTDVSEKAVASSTTSNEDESPGQPYQRERRNAISM
QPHSGGQGLGKISEEPSTSTEERASLVKKEIHGSLSHLAEHSVPYRGTLFAMDPRNGYMD
HHYPPPHLFPAFHPPVPVDARHHEGRYVYEPSPVPALHVPPGFAGSPAFSDISLIRISPH
RNPSAAAESPYNPPHPYINPYMDYIRSLHSSPSLSMISAARGLSPTDVPHAGISPAEYYH
QMALLAGHRSPYADIIPSVATTAGVGATALHMEYLQAMECSRFPSPRLSARPSRKRALPI
SPLSDHSFDLQTMIRTSPNSLVTILNNSRSSSSTSGSYGHLSAGAVSPALSFAYPPTPVA
LQQMHQQLMSRQPSIGSAFGHSPPLIHPAPTFATQRPIPGIPNVLSSAQVNTGPSESTQN
KPTSESAVSSTGDPMHNKRSKIKPDEDLSSPGAGSTQEQPEGMTLVKEEGDKDESKQEPE
VVYETNCHWEGCSREFDTQEQLVHHINNDHIHGEKKEFVCRWLDCSREQKPFKAQYMLVV
HMRRHTGEKPHKCTFEGCIKAYSRLENLKTHLRSHTGEKPYVCEHESCNKAFSNASDRAK
HQNRTHSNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRGDIHPRPPPRDP
GSNSQSRSPGQHPPGGFGDQRDYNHTTSNQDECLQVKAIKTEKPMASQPSPGGQSSCSSE
QSPRSNNSSSGIELALNSGGSMGDLSAIEEAPIMDSTVSTANAALGLQARRNVAGMRWME
QVKMERLKQVNGALPRLSPVPPPKGPSLPPVLGNGSQPGSYSTGGGSMTILPNRNELSIT
DITVLNMLNDRRDSTTSTISSAYLSSRRSSGISPCFSSRRSSQAEGRHHNISVTDSAYDP
ISTDASRRSSEASQSGGGNGGGLLNLTPAQHYRLKAKYAAATGGPPPTPLPNMERMSLKT
RMAMMGDCKETGLSPLPPVNVPRRCSDGTANGYGRRGLLPHEALGNSIRRASDPVRTVSD
PFNLPRVQRFNSLNNVNPLPMPPFIERRNLSLQNYNRSDGNLRRSVYSPCPTSISENIAM
EAMAMEAEGLLSDEDILPDDVVQYLNSQNQALYDNLNVMTRSEGPQDITAGIPDRYDQLQ
VPAVGQQYHSPEHETNKGDMPIQWNEVSSGSTDKSPPKQKYGQRPLASQPNRTFGQFNNM
VVQQQQQQQLQNIPRDNQNMYAIQQNGYQQNIEMDPYNVQDALGNTNNAGSVLGVQMNKG
QQQYIQNFRRIDNSYNGGSQSQDIRSNGIQMMNDNQHNIMQASVTAGRQVANMAGELQQR
AHSVQRNYMQTQPMVQQVNEGLNFQGLNRENSVCMGQYPSHSHSQSAQGQVLQGYSQLAP
VTQQNNVMYNSNRQQQRNNMAQQGQMTNGNPTFQVASVKLEMQDQLQQTSCSGMQNYPRQ
VFDQNMGFNPAAGKPASFSNQENNCMLGVTTNNNDPSELLSPGANQVTSTEENNSNSLDN
VLLDFDAILDDGDHASLISGVLSPSIFQNLSRNSSRLTTPRASMPFHSVPGGLTNMAVGD
MSSLLTSLAEESKFLAIMQ
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggaagcccagtcccacaccaccaccgcagctgagaaaaataaagttcaaaactctgtt
gtgaagggctctactcgaacagatgttagcgagaaagcagttgcctccagtacaacttcc
aatgaggatgaaagtcctggacagccttatcagagagaaagaagaaacgcaatctcaatg
cagccgcactcaggaggacaaggtcttggaaaaatcagtgaggagccctcaacatccact
gaggagagagcctcgctggtgaaaaaggagatccatggatccctttcccacctggctgaa
cactcggtcccttaccgcgggacgctattcgcgatggacccaagaaatggttatatggat
caccattaccccccaccacatcttttcccagccttccaccctcctgttccagttgatgcc
aggcatcatgagggccgctatgtgtatgagccatctcctgtccccgcgctgcatgtgcct
cctggtttcgcaggcagtcccgcattctccgacatctccctgatcaggatttcccctcac
aggaacccttcagcagcggccgagtctccctacaaccctcctcacccctacatcaacccc
tacatggattacataaggtccctgcacagcagcccttccctgtccatgatctcagctgcc
aggggactcagccccaccgatgtgccacatgcgggcattagcccagctgaatattaccat
caaatggccctcctggcaggtcacaggagtccatatgctgacatcattccttcagtagca
accacagcaggggtaggggccacggcgcttcatatggagtacctgcaagccatggaatgt
tccaggtttcccagtcccagactgtcagctcgccccagccgcaagagagccctgcctatt
tcccctctctccgaccacagctttgacctacagaccatgataaggacatctccaaactcc
ctggtcaccatcctgaataattccagaagcagctcctcaactagtggctcatatggccac
ttatctgcaggtgcagtaagccctgctctgagctttgcctacccacctaccccagtggcc
ctccagcagatgcatcagcagttaatgagtcgtcagccaagcataggctctgccttcgga
cacagccctcccctcatccatcctgctccgacttttgccacccaaaggcccatccccggt
atcccaaatgtcctgagctcagcacaagtcaacaccgggccttccgagtccacacagaac
aagcccaccagtgagtcagcagtgagcagtacgggagacccaatgcacaacaagcgctcc
aagattaaaccagatgaagacctttccagcccaggtgcaggaagcacgcaggaacagcct
gaaggaatgaccttggtaaaggaagagggagacaaggatgaaagcaagcaagagcctgag
gtggtatacgagacaaactgccactgggaaggctgttccagagagtttgacacacaggaa
cagttagtccatcatattaacaatgaccacatccacggggagaagaaagagtttgtctgt
cgctggttggattgctccagggagcaaaagccttttaaggcccagtacatgctggtggtt
cacatgaggagacacacaggggagaaaccacacaagtgcacgtttgaaggttgtattaag
gcctactccagacttgaaaacttgaaaacccacttgcggtctcacactggagagaaacca
tacgtctgcgaacatgaaagctgcaacaaggccttctccaatgcctcggacagagccaag
caccagaacagaacccattcaaacgagaaaccttacatttgtaagattcccggctgcaca
aagcgttacactgacccaagttccctccgaaaacacgtcaagacggtccatggccccgag
gctcacgtgacgaagaagcagcgtggagacatccatccacgacctcctcccagagaccct
ggcagcaactcccagtccagatccccaggacagcaccctccagggggcttcggagaccaa
agggattacaaccacactacctcaaatcaggacgaatgtctgcaggttaaggcaataaaa
acagagaaacctatggcgtctcagccaagccctggcggtcagtcttcatgcagcagtgaa
cagtcccccaggagcaacaattccagcagtggaatcgagcttgctctgaacagtggaggc
agcatgggagacctcagtgccattgaggaggcccccatcatggattctacagtgtccaca
gcaaacgcagcactcggcctgcaggcccggaggaatgtggcagggatgagatggatggag
caggtcaaaatggagaggctgaaacaagtcaatggagccctaccaaggctgagccccgtt
ccacctccaaaaggcccatccctgcctcccgttttaggaaatggctcacagcctggctcc
tacagtactggcggtggatccatgaccatccttcccaataggaatgagctctccatcact
gacatcacagtattgaacatgttgaacgaccgacgggacagcaccaccagcaccataagc
tcagcctacctgagcagccggcgctcttcaggaatctctccatgcttctccagccgcagg
tccagccaggccgaggggcggcaccacaacatcagcgtgacagactctgcgtacgacccc
atctccacagatgcttctagacgctccagcgaagccagccagagcggcggtgggaatggt
ggaggcttgctgaacctcacccctgcccaacattacaggctcaaggccaaatatgctgct
gctactgggggaccgccaccaacaccgctgcccaacatggaacgcatgagcctaaaaacc
agaatggcaatgatgggcgactgcaaggaaaccgggctatctcctttgcctcctgtgaac
gtgccgcggagatgcagtgatggcacggctaacgggtatggcaggaggggccttttgcct
catgaagcactagggaacagtatacggagagccagtgaccctgtaaggacagtgtctgac
ccatttaacctccccagggtccagcggttcaacagcctcaacaatgtgaaccctctcccc
atgcctccgttcatagaaaggaggaacttgagcctccagaactacaaccgctctgatggc
aacctgcgtcgctctgtgtattcaccttgccccaccagcatcagcgagaatattgccatg
gaagcaatggcaatggaagcagagggtctccttagcgatgaggacatcctgcctgatgat
gtggtgcagtaccttaactcccagaaccaggcactgtacgacaacctgaacgtcatgaca
agaagcgaaggcccccaggacatcacagcaggcatacctgataggtatgatcagttgcag
gtaccagcagtaggccagcagtaccatagccctgagcatgaaacaaacaagggtgacatg
cctatccagtggaatgaggtcagctcagggagcaccgacaagtcgcctcccaagcagaag
tatggacagcgaccactagccagccagcccaaccgtacctttgggcagtttaacaacatg
gtggtacagcaacaacaacagcagcagctgcagaacatacccagggacaaccaaaatatg
tatgccatccaacaaaatggctaccagcaaaacattgagatggacccgtataatgtccag
gatgctttgggtaatacaaataatgctggcagtgttcttggcgtacagatgaacaaaggg
caacagcagtacatacagaattttaggaggattgataattcttacaatgggggctcacag
agccaggatatcagaagcaatggcatacagatgatgaatgacaaccagcacaacatcatg
caggcctctgtgacagcaggacgccaagttgccaacatggctggtgaactgcagcagcgg
gcacattctgttcagcgtaattacatgcagacccagccaatggtccagcaagtgaatgag
ggtttaaactttcaaggattgaacagagagaactcagtgtgtatgggacagtacccctct
cactctcactctcaatctgcccaaggccaagtgctgcagggctattctcagttagcgcct
gttactcagcaaaacaatgttatgtataattccaacaggcagcagcagaggaacaacatg
gcacagcagggtcaaatgacaaatgggaacccaacatttcaggttgctagtgtaaagttg
gaaatgcaggaccagctacaacagacctcctgctctgggatgcagaattatccaagacag
gtgtttgaccaaaacatgggcttcaacccggcagccggaaagcctgcctcattctctaac
caggagaacaattgcatgctgggtgttactaccaacaataacgacccctctgagcttctg
tctccaggggccaaccaggtcaccagcacagaggaaaacaacagcaatagcctggacaat
gttctgttggattttgatgccatcctggatgatggggaccatgctagcttaatttctggg
gtcttgagtccaagtatctttcagaacctctccaggaactcttcccgcctcaccactcct
cgagcttcaatgccattccacagcgtgcctggcggcctcaccaatatggctgttggggac
atgagttctttgctgacctcccttgcagaagaaagcaaatttcttgccatcatgcaatag
DBGET
integrated database retrieval system
