Polyodon spathula (Mississippi paddlefish): 121314243
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Entry
121314243 CDS
T07273
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121314243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121314243
03041 Spliceosome [BR:
pspa03041
]
121314243
03009 Ribosome biogenesis [BR:
pspa03009
]
121314243
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121314243
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121314243
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121314243
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121314243
Complex C
U4/U6.U5 tri-SnRNP related factors
121314243
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121314243
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121314243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
INO80F
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
121314243
NCBI-ProteinID:
XP_041103221
LinkDB
All DBs
Position
1:complement(12105671..12176111)
Genome browser
AA seq
1031 aa
AA seq
DB search
MADAFGDDLFSVFEQEEKTSTKKRKEVDSGTKPGKSHGKPKADNIDSTAKSKRDLETDEN
GEIIFGKKPKLETVSAEEINLADLMPKVKVEQVETVEGCTHEVALPADEEYTQLKPRVGK
AAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFNDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVVF
DEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQACHVVYTDY
RPTPLQHYIFPAGGDGLHLVVDESGEFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNTDEEKKLVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGVGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINM
PARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAIGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYKAVPGVVERVKKLEEQ
YNEIEISNEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLAKVKNDDDDFGW
GVVVNFSRKSNVKASTGDLDPLYVVEVLVHCSKESVKNAATDAAKPVKPGEKGEMQVVPV
MLHLLSAISSVRLYIPKDLRSFDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLK
KVIQKVEAFEHRMYSHTLHNDPNLEAVYNLCEKKAQIAGDIKTAKRELKKARTVLQMDEL
KCRKRVLRRLGFATSSDVIEMKGRVGCEISSADELLLTEMIFNGLFNDLTSEQATALLSC
FVFQENASEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEELYLNSFRPHLMDVVY
TWANGSTFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgaacaagaggaaaaaacaagc
accaagaaacgaaaagaagtcgacagtggaaccaagcctgggaaatctcatggcaaacct
aaagcagataatattgattccactgcaaaaagcaagcgtgacctggagaccgatgaaaat
ggtgaaataatatttgggaagaagccaaagctcgagacagtatctgcagaagaaattaat
cttgcagatctcatgccaaaagttaaggtggaacaggtggaaactgtagaaggctgtaca
catgaggtggctctgcctgcagatgaagagtatactcagttgaaacctcgtgttggaaaa
gcagcaaaggagtatcccttcattctagatccttttcaaagggaggctattttatgcatt
gacaataaccagtctgtcctggtatctgcccatacttcagcaggaaaaacagtatgtgct
gagtatgctattgcccttgctttgagggagaagcagcgagttatattcaccagtcctatt
aaagccctgagcaaccagaaatacagagagatgtatgaggagttcaacgatgtgggccta
atgactggtgatgtcaccattaacccaacagcttcatgtcttatcatgaccacagagatt
ttaagaagtatgctctacagaggatcagaggtgatgagagaagtagcatgggttgtattt
gatgaaatccattacatgagagactcagagcgtggtgtggtttgggaagaaaccattatt
cttcttcccgacaatgttcactatgtgtttttatcggccaccatccccaatgcacgtcag
tttgctgagtggatctgccatcttcacaaacaggcctgccatgtagtctacacagactat
cgacctacaccacttcaacactacatctttccagcagggggcgatggacttcacttggtt
gtggatgaaagcggagagttcagagaagataatttcaacacagcgatgcaagtgttgaga
gatgcaggtgacctggcaaagggagaccagaagggccgtaaaggaggaactaaaggacca
tcaaatgtgttcaagattgtgaagatgatcatggaaaggaactttcagcctgtcattatc
ttcagtttcagtaagaaagactgtgaagcctatgcactgcaggtttctaagctggacttc
aatacagatgaagaaaagaagcttgtggaagaggtctttaacaacgccattgactgcttg
tcagatgaagacaaaaaacttccccaggttgagcatgtgttgccactgttgaagagagga
gtagggatccatcatggtggtttgcttcctatcctgaaggaaactattgagattttgttc
tctgaaggcttactgaaggccttgtttgcaacagagacgtttgccatgggaatcaacatg
ccagccaggacagttttgttcacaagtgcccgcaagtttgatggaaaagattttcgttgg
attacttcaggtgaatatattcagatgtctgggcgtgccggcagacgtggcatggatgaa
agaggaatagttattttcatggttgatgaaaagatgagcccggcaattggaaagcagctt
cttaagggttctgctgatcctctcaacagtgctttccatttgacctataacatggtgtta
aacttgctgcgtgttgaagagattaaccctgaatacatgttggaaaagtctttctaccag
tttcagcattacaaagccgtcccaggagtagtggagagggtgaagaaactagaagagcaa
tacaatgaaattgaaatctccaacgaagaaagtgtggtcacctactacaaaattcgacag
cagctggctaaactcggaaaggagattgaagaatacattcacaaaccaaaatactgtttg
cctttcctgcagcctggaagactcgcaaaggtgaaaaatgatgacgacgactttggttgg
ggagtggttgtaaacttctccaggaaatcaaatgtgaaggctagtactggagacctggac
cccttgtatgtggtagaggtgctagttcattgcagcaaggagagtgtgaagaatgctgcc
acagatgctgccaagccagtgaagccaggcgagaaaggggagatgcaggttgttcctgtc
atgctgcatcttctcagtgcaatcagctctgtcaggctatatattccaaaagaccttcgt
tcatttgacaacaggcaaagtgtgctgaagtccattcaggaagtccagaagcggttccct
gatggagtacccctgttggatcctattgatgacatgggaatcaaagaccagggactgaag
aaagtgattcagaaagtggaggcctttgaacacagaatgtactcccacactctgcacaat
gacccaaacctagaggctgtgtacaatctctgtgagaagaaggcacagatcgctggggac
attaagactgcgaagcgtgagctgaagaaagcgaggacagttttgcagatggacgagctc
aaatgtagaaaacgtgttctaagaagattaggatttgccacttcatctgatgtcattgag
atgaaagggcgtgttggttgtgagattagcagtgctgatgagcttctcctcacagagatg
atcttcaatggacttttcaatgatcttacttcagaacaagccacagctttgcttagctgt
tttgtatttcaggaaaatgccagtgaaatgccgaaactgaccgaacaattggcaggaccg
cttcggcagatgcaggaatgtgcgaagcgtatagccaaagtatcggcagaagctaaactc
gaaattgatgaagaactgtaccttaattcattccgtccccacctgatggatgtggtctac
acatgggccaatgggtccacattttctcagatttgcaaaatgacagatgtttttgaaggt
agcatcattcgttgcatgaggcgcttggaggaactgctgagacagatgtgtcaggctgca
aaagccataggaaacacggaactggagaacaagtttgcagaaggtatcacaaagatcaag
agagacattgtgtttgctgccagtctttatttgtag
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