Polyodon spathula (Mississippi paddlefish): 121314374
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Entry
121314374 CDS
T07273
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121314374 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121314374 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121314374 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121314374 (rb1cc1)
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121314374 (rb1cc1)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121314374 (rb1cc1)
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121314374 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
ubiquitin
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
121314374
NCBI-ProteinID:
XP_041103493
LinkDB
All DBs
Position
4:complement(28424987..28503446)
Genome browser
AA seq
1610 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVADLKHAIQVKYKIATQHQVLVVNGGECMVADRRVC
SYSAGTDTNPIFLFNKEMILCDRPPAIPKTTFSVENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLCKFETAYNNYQQ
SIEDIKQKLASLGNAVSVMAKIPLLECLTRHSYKESLERLSSPAEKEGAEEETDEEKSTK
SVLHSGEPRASHKSSASFSISVEHPTQDCATQEDKETNSKSQDAVLQDCDPQEKSDLPLF
NVSLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLAECRDTIAKLDNQNMKAIKG
LEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIML
TNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELFERVR
VVEALGTVPQMYCLAVVEVVRRKIFIKHYREWANALVKDGKQLYEAEKAKRDSFGKLFRK
SFLRNRLFRGLDSWPPTSFCTHKPRKFDFELPEIYLCDLQFLQSCCPPEVQSFLRVPTLC
DFEPLHQHVQVLHQLVKAAQSVDEMSQTITDLLSEQKASSSQPTPKSTMVPISESTTGAA
STSSKTPPSLDLQGGICQPLSLQGLLEDLSPDSIDAHTFDFETIGHPNMDTLLKQGSLDL
DSLAESPESDFMSAVNEFVIEENLTSPNAISDPQSPEMMVESLYSSVINAIDNKRIQDTT
TLEKENTKVAMLKVCIEKYRSAAEESQGSLKSIKEDLCHFRGLVQKEQRDFSFALKSVSG
EVRNIIDNIKYSHNENLKEIHQHEQQIIQRDYEDETQRLREESNLNQRNLEELKKVLLEL
EEGIENKENEISLLKNEKDMFLESENSKDQKLLDLEQKMRDQNSEMQELLQSRESLKGDL
AKLYLEIDNNKQKLKLEFENLEKSHLKELEERLQIRHAKELHELERENLENQENIVKENQ
EKLHQMQELHASELQACENQLKELEVKVSELSDMRCKLEVEIALKEAETEEIRLLLEETR
SQQQETVRVEVEKETEALRREINDLKHQLQAMNDENEVGLAELRALMRIEKDHCISELVD
SHEKETNLLRSELTSLQKKAMDVERDLKEQIRQLQNDCDNQINAQEKEKEEKERVFQEQQ
QHCNNVICGLQEENKLLSSNLQQEKQTNMQILNKEKEEAVKAALADAFKDFEHQKKATEE
KLLEKIKQLENQLKEKSCTEREVLSSSHTEALAGKPLTSNADLQEKFHEERASLLGQLER
LEKTKNEEMQTLKTSLIAEQQMNFNTVVTREKLKKEQIINELNDKLKKTAQQQERDKDLI
ETLSEDRANLLQEKKQLEEELNKVRSSSLVSSAFFSSANHPAGADLAGACAVEPPVESER
LTSVAAIGEDGRIDSAVEASMMAVHENIPVISEEKQRIILLERTLHIKEEENKRLNQRLM
SQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLAALDLK
PASGTPRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtgtttcaggtcaacaatggaagtaccctgacttttgatactgaactt
gctgtacaaactgttgcagaccttaaacatgctatccaggtcaaatataagattgctacc
cagcaccaagttcttgtcgtcaatggtggggaatgcatggttgcggataggcgtgtttgc
agttatagcgctggcacggatacaaatccaatttttctgttcaacaaagagatgattttg
tgtgatcgccccccagcgattcctaaaacaactttttcagtggaaaatgaaatggagctg
aaggtggaagaatctctaatgatgccagctgtttttcacactgttgcttcaagaacacaa
ctagctgtggaaatgtttgaagttgccaagaagctttgttcattttgtgaacggctagtc
catgatgaacaccttcaacaccaaggctgggctgccataatggctaacctggatgactgt
acactctcttatcagaagctgctttgtaaatttgaaactgcctataacaattatcaacag
agcatcgaggacattaagcagaaacttgccagtctagggaatgctgtatctgttatggct
aagattccactcctggagtgtctaaccaggcacagctataaagaaagtttggaaagactg
agctcacctgctgagaaggaaggagcagaggaagaaactgatgaggaaaaatctactaaa
tccgtgctacactctggagaacctagagctagtcataaatcatcagcttcattttccata
tcggtggaacatccaactcaggactgtgcaacacaagaagacaaagagacaaacagtaaa
agtcaagatgctgtgctgcaagactgtgatccgcaagagaagagtgacttgccgttattt
aatgtctcgttattagactggataaatgtacaagatagaccaaatgacgttgaatctgtt
gtcagaaagtgctttgactccataaacagacttgatccaagaatcattcaaccctttttg
gcagaatgtcgggatactattgccaaacttgataatcagaacatgaaggctattaaagga
cttgaagacaggctatatgcactagaccagatgatagccagctgtaaaaagctggtaaat
gaacagaaggaactagctcagggatttttagccaatcaaaaaagagctgaaaatctgaaa
gacacttctgttctacctgacttgtgtctgagccatgcaaaccagctgatgatcatgtta
accaatcaccggaaactattggatattaaacagaagtgcaccactgccaaacaggagctt
gcaaacaatctacaagtcagactaaagtggtgttgttatgtgatgcttcatgcagatcag
gatggggagaaactgcaggccttgcttcgtcttttaactgagctgtttgagagagtccgg
gtggttgaggctcttggcactgttcctcagatgtattgcttggctgttgtggaggttgtg
aggcggaagatttttataaaacactacagagaatgggccaatgctttagtaaaggatgga
aaacagctctatgaagcagaaaaagctaaaagagattcatttgggaagttgttcagaaaa
tcttttctcagaaatcgcttgtttagaggacttgattcttggcctcccacttcattttgc
acacataagcctcgcaagtttgactttgagcttcctgaaatatatttatgtgatctgcag
tttttgcagtcttgctgtcctccagaggttcagtcttttctcagggttccaacactgtgt
gactttgagcctttacaccagcatgtacaggtccttcaccaactggttaaagctgctcag
agcgtggatgaaatgtcacaaaccataacagaccttctgagtgagcaaaaggcatccagt
agtcagccaactccaaagtccactatggtaccaatatcggaaagcacaacaggagccgca
tctacctcttccaaaactccaccctcactcgaccttcagggtggcatatgtcaacctctg
agtctccagggcctgttagaagatttatctccagatagcattgatgcccatacatttgac
tttgagaccattggccatccaaacatggatacacttttaaaacaaggatctctagacttg
gactccttagcagaaagccctgagtcagacttcatgtctgctgttaatgagtttgtcatt
gaggaaaacttgacttcccctaatgcaatcagtgatccacaaagccctgagatgatggta
gaatctctttattcctctgtcattaatgcaatcgacaacaagcgcatccaagatacaacc
actttggaaaaggagaacaccaaagttgcaatgttgaaagtatgcatagaaaaatacagg
tcagctgctgaggaatcacagggcagtttaaagagcatcaaggaggatctttgtcatttt
agaggactggttcaaaaggagcagagagattttagctttgctttaaaatctgtatcggga
gaagtaagaaacataattgataatattaagtattcccacaatgagaacttaaaggaaata
catcaacatgaacaacaaatcattcaaagggattatgaagatgaaacacagaggttaagg
gaagaatccaatttgaaccagagaaacctggaggaattaaagaaggtgttgttagagctt
gaagagggcatcgaaaataaagaaaatgaaatttctttgttaaaaaatgagaaagacatg
tttctagagtcagaaaatagcaaagatcaaaaactgcttgacttggagcaaaaaatgcga
gaccaaaatagtgaaatgcaagagctattgcaatctagagagtcactgaaaggcgattta
gctaaattatatcttgagattgacaataacaagcaaaaactaaagcttgaatttgagaac
cttgaaaagagtcacctaaaggaactggaggaaaggctacagatcaggcatgccaaagaa
ctgcatgaactggaaagggaaaaccttgaaaaccaagaaaacatagtaaaagaaaaccaa
gaaaagctgcatcaaatgcaggaactccatgcatcagaacttcaagcatgtgaaaatcaa
ctgaaggaacttgaagtcaaagtttctgagctatctgatatgaggtgtaagttggaggtc
gaaatagccctgaaggaagcagagacagaagaaataagactgcttttggaggaaaccaga
tctcagcagcaagagactgtgagggttgaggttgaaaaggaaactgaggctttgagaaga
gagattaatgatctaaaacatcaacttcaggctatgaatgacgagaatgaagttggactt
gcagagctgagagctctaatgagaattgaaaaagaccattgtatctctgagttagttgac
agtcatgaaaaagagaccaatcttctccgctctgagctaacgtctttacagaaaaaagcc
atggatgttgaaagggaccttaaagaacaaattaggcagcttcagaatgactgtgataat
cagattaatgctcaagagaaagaaaaagaagaaaaggaaagggtttttcaggagcagcaa
caacattgtaataatgttatatgtggtcttcaggaagaaaacaaacttctgtcaagcaat
ctgcagcaggagaagcagactaatatgcagattttgaacaaggaaaaggaggaggccgtc
aaagctgccctggcagatgcctttaaagactttgaacaccagaagaaggctactgaagaa
aaactgttagaaaagatcaaacagcttgagaatcagttgaaagaaaaaagctgtacagaa
agagaggttttgtcgtctagtcatactgaggcacttgctgggaaaccgctaactagtaat
gcagatcttcaggaaaagttccacgaagaaagggcctctttactggggcaacttgaacgg
cttgaaaaaacaaagaacgaagaaatgcagacccttaaaacatcattgatagcagagcag
cagatgaatttcaatactgttgttacaagagaaaaactgaagaaggaacaaataataaac
gagttaaatgataagctgaagaagacagcacagcagcaggaaagggacaaagatttgatt
gaaactctctcagaggacagagcaaatttgctccaagaaaagaagcagctagaagaagaa
cttaacaaggtccgcagcagttcattggtttcctcagcattcttttcttctgctaatcat
ccggctggggctgatttggcgggagcgtgcgcagtagaaccccctgttgagtctgagagg
ctgacctcagttgctgccattggggaagatgggagaatagattctgcagtggaagccagc
atgatggctgtacatgaaaatatacctgtcatatctgaggaaaaacaaaggatcatttta
ttagaaaggactttacacataaaggaagaagagaacaagcgtctaaatcaacggctgatg
tctcagagcatgtcttcagtatcatcaagacattctgaaaaaattgccattagagatttt
caggttggagatttggttcttattatcctggatgaacggcatgataattatgtcctgttt
actgttggcccaaccttatactttctgcactccgagtctcttgcagcattggatctcaaa
ccagcatcaggtacgccacgaaggccttgggttcttggaaaagttatggaaaaggaatat
tgtcaagcaaagaaggctcaaaaccgatttaaagttccattgggcacaaagttctacaga
gtgaaagctgtaccctggaacaagaaagtataa
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