Polyodon spathula (Mississippi paddlefish): 121314380
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Entry
121314380 CDS
T07273
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121314380 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121314380 (sox17)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121314380 (sox17)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
YABBY
HTH_24
DUF5038
Motif
Other DBs
NCBI-GeneID:
121314380
NCBI-ProteinID:
XP_041103504
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All DBs
Position
4:28904148..28906097
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AA seq
393 aa
AA seq
DB search
MSSPDAGYASDDQTQGRCSMSIMMAGIGHCQWTDPLTPLGEGKIKSEACSTSSGNQSRGK
PEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLESGFLVHSVTEQQASTLGNDGRVCVDNRNVNY
HEHRYPVQSQLSQLSQYRESQSIGGHFDSYSLPTPDTSPLDIVANDAAFFPSHAQEDCRM
MPYSYPHQTTEYLSQEHHSNPVLRRPLPPAEHMGQVSSLQGLMGCHGSLAMYYSQMCAPT
NPKPQQGIHSGQLSPPPESHQVDNVDHMHQSDLLADVDRNEFEQYLNSAARSDIAGLSYN
GHETNMPLTDNSLISSVLSDASTAVYYCNYNSA
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcctgatgctgggtatgcaagtgacgatcagacccagggaaggtgttcgatg
tcaatcatgatggctggaattggacactgtcagtggacagatcctttaactcctctcggg
gaagggaaaatcaaaagtgaagcctgctctaccagctccggaaaccagagcagaggcaag
cctgaacctcggatacggcgacccatgaatgcgtttatggtctgggcgaaagatgaacgt
aaacgtctggcacagcaaaacccagatctgcacaatgccgaactcagcaaaatgcttggt
aagtcgtggaaagcattgcctgtgactgaaaagcgcccatttgtggaagaggctgagaga
ctcagagtgcagcacatgcaagaccaccccaactacaaatacagaccacggaggagaaag
caggtgaaaagaatcaagagactggaatctggctttctggtgcacagtgtgactgaacag
caggcttcaactttagggaacgatggcagggtctgtgtagacaaccgtaatgttaattac
catgagcaccgttacccagttcagagtcagctctctcaacttagtcagtatcgggaatcg
caaagcataggggggcattttgactcttacagtttacccacccctgacacatcgcctctg
gacattgtggcgaacgatgctgcatttttcccatcgcatgcccaagaagattgccgcatg
atgccttacagttacccccaccaaaccacagagtatctctctcaggaacaccattccaat
cctgtgcttcgcaggcctcttccccctgcagagcacatgggtcaagtcagctctttgcag
ggtttaatgggatgtcatggctctctggcaatgtattacagtcagatgtgtgcacccacc
aacccgaaacctcaacagggaatccactcgggacagctctcgcctccacccgaatcccat
caggtggacaatgtagatcacatgcaccagtcagatcttttggcagacgtggatcgcaat
gaatttgagcagtacctgaactctgccgcccgctcagatatagcagggctatcttataat
gggcatgaaactaatatgcctctgactgacaatagtctaatttcttcagttctctccgat
gcaagtaccgctgtatactactgtaattacaacagtgcataa
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integrated database retrieval system
