Polyodon spathula (Mississippi paddlefish): 121314394
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Entry
121314394 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7-like isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121314394
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121314394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
CHDCT2
HTH_Hrp3
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
121314394
NCBI-ProteinID:
XP_041103529
LinkDB
All DBs
Position
4:30160440..30238481
Genome browser
AA seq
3035 aa
AA seq
DB search
MADPGMMSLFGDDGNLFSEGLEDLGECGFPESQVNPLGPQLPIDQGYGSLPSSLHHPPQP
PPGQGQPKLSHFDHFSQYEQQKMHLMEQQGGRMLSNAPGNGMSSPHSQYHNPPPPVSHGG
GGQMGVYPGLQGERHGQPFVDSGSLWGPRAVQVPEQVRAPFQQPPTQQSAPSGHVQQMGA
YMARGDYSMQPHSQTPTPPRINPFSQGPQQEGGRGPPANHFLGHMSPQQNPNLVGPPMRH
PVQQQQPQQFHHRPTQGNLHPESVAHSPRFSPSPSQPQQQQQVVATGRPQQSLTFNSRNQ
AVPSTTVNNSGQYSPYSPYSNLNQGLVNNTGMSPNIGLTSNNTPMTQGRYPNTAVGFPSS
TSQGLMHQQSIQVNQINSQPMHPTQQPQPAPQQQPQGSYGSPPPMSPMKALCNPAGTPPP
QQVRPGSAGMVMEVGGYPNMPHQPPGAIGLAQRNIGPRGLQQPPSSQPYMGLSPSQRDMA
GGLRPAGGIGGNHAEAPGIQELRLLAGPPQQPHHPGQPLLPPLPFQKQQLPTCPPMQQQP
HLIMHHQNSPPPQSHHQPWAQQHKSPPMPQKVPVQQPSQSDPSVKIPASDMTQVSSQNSR
LVNCEEPQTELEQKQQKKKKKKKATRVRTGEITKDTGEKTLQEGLGPLSPETCGFPEKKK
KPKEKKEPKEPKKPKEPKTPKAPKTPKEPKEKKVKATTPKPKSTKKASSNKADPEISTTK
KKEGKRKRESLDNSDLEKSPPPSPEEEDDLGIQKRRSSRQVKRKRYTEELEFKISDDEVE
DVGDGTGRKSPSNTSQTEPQEVPDDGPVVEKIMSVHMGKKQLESGEEVDVEEFYVKFKNF
SYLHCRWADLEELEKDKRIHQKIKRFRAKQSVKFLSEMEDEHFNPDYVEADRILDVSEST
DDNGETVSHYLVKWCSLPYEDSTWELKQDIDQAKIEEFEKLMAREPKQTRVERPPPNDWQ
KSESSREYKNGNSLREYQLEGVNWLLFNWYNARNCILADEMGLGKTIQSITFLHEIFLKG
IHSPFLIIAPLSTIPNWEREFHTWTELNVIVYHGSQASRRMIQTYEMNFRDSQGRVIKGA
YKFHAVITTFEMILTDCPELRNIQWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTG
TPLQNTVEELFSLLNFLEPERFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDV
EKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGGPGGGGSSGGGNANIPNLLNTM
MELRKCCNHPYLIKGAEEKILDEFRETHHTDCPDFHLQAMVQAAGKLVLIDKLLPKLKAG
GHRVLVFSQMVRCLDILEDYLIQKRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC
TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQRKAVKIYRLITRNSYEREMF
DKASLKLGLDKAVLQSMSGRENSANGMQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEE
DIDQILKRRTQTITIESEGKGSTFAKASFVAAGNRTDISLEDPDFWQKWAKKAELDMEAI
HGRNNLVIDTPRIRKQTRHFSSIKEEDMMEFSELESDSEEKPSLKPRRPQDKSQGYPRTE
CFRVEKNLLVYGWGRWTDILSHGRFKRQLTEQDVETICRAVLVYCLNHYKGDENIKSFIW
DLITPTEDGQTRALQNHSGLSAPVPRGRKGKKVKTQSAQPVLQKAGWLATCNPDTLFQED
SYKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADSILEGTDSSEIDVWIPQPFHAELPADW
WDREADKSLLIGVFKHGYEKYNSMRADPALYFLERVGMPDAKAIAAEQRGADIMADGADG
GDFDREDEDPEYKPARMPFKDEMDEFANSPLDDKDEAMDAEIAGKSGENAELGKLYWPSA
SALTTRLRRLITAYQRSYKREQMRQEAMSKTDRRRRRPREEVRALEAEREAIITERRQKW
TRREEADFYRVVSTFGVIYDASKQRFDWNQFRAFARLDKKTDDSLEKYFYSFVAMCRRVC
RMALKSDEEPPDPTIIIEPITEERASRTLYRIELMRKIREQVLPHPELEERLKLCQASLD
LPEWWECGRHDKDLLVGACKHGVSRTDYHILNDPNLSFLKAHKNFAQNKSSGQFSGTPLL
SQTPLLDPSTLASQSKKEEDQDQPIKLEGAGVQELDENKTEVGSPKTKVEKENGDEKASN
GEMVLAEDSESALERVICETETAPEDPEALAELGPKSLSEKGSEEDEDKMDDDDKSEESS
QAEAGVASQVKNFDEESNASLSTARDETRDGFYAEDGETSMAQILHDRSYSFSFWPKDRV
MINRLDNVCETVVKGKWPVNRRQLFDFPGLLPGYIPSVIDSPLQRRSFAELSMVGQASYS
GSEDIAQSPQISKQEDALSMPVPRQRRRRRRKIEIEAERAVKRRNLMEMVAQLRESHVAS
ESHDKAVDLTKAFREATGSTSNLSAVASKFLLPNASTPTPNAFKTQFELLQAGFSGTPTR
HLMNGSILDGDLPTKRRRGRRKNVEGLDLLFMANKRASLSAEDVEVTKAFEEGVQTPPQP
LRNIPSPGQLDPNAHIPVINLENGTRLVGENAPQNKDLVEWLKQHPTYTVDMPSYLPKPK
QKRHRCRNPNKIDINTLTGEERVPVVNRRNGKKMGGAMAPPMKDLPRWLEENPEFVIAPD
WTDIVKQSGFLPESMFDRLLTGPVMREEGTGRRGRRPKSEIAKAAAHAAAAAAAAATASS
SGINPLLMNSLFAGMDLTSLQNLQNLQSLQLAGLMGFPPGLATASVGGGGDAKHAAGMLP
LMLPGMAGLPNMFGLGGLFNNNLAAAAVATSSTASTTGEAEEGTSKIEEKDEESEDKDSD
KSCEVSSETNREGSANAAAVSAAAAATAAAAAMSTNPLAFNPFLLSTMAPGLFYPSMFLP
PSLGGLSLHGFSQATLAGLQNAMGGSGRSKDKEADTDADLGTKEEDGVNALEDSDTDESQ
NKTADSSVLEDELGPCEEVDSLDGAEVVEEDVNDE
NT seq
9108 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccctgggatgatgagcttatttggggacgatgggaatctgttcagtgaaggg
ttggaggaccttggtgagtgcggctttccggaaagccaggtcaacccactgggacctcag
ttgcccattgaccagggttacgggtctctgccatcatccctccaccacccgccacagcca
ccacctggccaaggccagcccaaactaagccactttgaccacttcagtcagtacgagcag
cagaagatgcacttgatggagcagcaaggaggtcggatgttgtcaaacgcacctgggaac
gggatgtcctctcctcattcgcagtatcacaaccctcccccaccagtctctcatggaggt
ggaggtcaaatgggtgtctaccctggccttcagggagagagacatggccagccctttgtg
gacagtggctctctctgggggcctagggccgttcaagtccctgaacaagtcagagcacct
tttcagcagccgccgactcaacagtcagccccttctggccatgttcaacagatgggtgct
tacatggcccgtggggattactccatgcagccacacagccagacacccactcctcccagg
atcaacccattctcccagggcccgcagcaggagggaggcagaggacctccggccaatcac
ttcttgggccacatgtccccacagcaaaacccgaacctcgtcggcccacctatgcgccac
ccagtacaacagcagcaaccgcagcagtttcaccaccgcccaactcagggcaacctccac
ccagaatctgttgcccatagccctcgcttctcccccagcccctcacaaccgcagcagcaa
caacaggttgtagcaacagggagaccccagcaaagcctgaccttcaattcgcggaaccag
gcagtcccgtcaaccactgtaaacaactcagggcagtattctccttactctccgtatagc
aacctcaatcagggattagtgaacaatacagggatgagtcccaacattggccttaccagc
aacaacacccccatgacccaggggcgctaccccaatactgccgtcggttttccatcaagc
acctcccaggggctaatgcaccaacagtcaattcaagtcaaccaaatcaattcccagcct
atgcaccccacccagcagccgcagccagctccacagcagcaacctcagggatcctatggt
tctccccctcccatgtcccccatgaaggccttgtgcaaccctgctggaacgcctcccccg
caacaagtcagaccggggagtgcaggcatggtaatggaggttgggggttaccccaacatg
cctcaccagcctccgggagcaatagggctggcccagaggaacattggccccagaggcctg
cagcagccaccttcctcacagccctatatgggcttgtcgcccagccagagagacatggct
gggggtctgcgccctgctggagggattggggggaaccatgctgaggcaccggggatccaa
gaactgcgtctgctcgctggacctccccagcagccacatcatccaggacaaccgttgctg
ccaccactgccttttcagaagcaacagctgccaacatgcccacccatgcagcagcaacca
cacctgatcatgcaccaccagaactctcctcccccacagtctcaccaccagccgtgggcg
cagcaacacaagtccccacctatgcctcagaaagtgcctgttcaacagccttctcaatca
gatccatcagtcaagataccagcatcagacatgacacaggtttctagccagaactctcgg
ctggtgaactgtgaagagccgcagactgaactggagcagaagcagcagaaaaagaaaaag
aagaaaaaagccactcgggtccgcactggggaaatcactaaagacactggagagaagact
ctccaggaaggacttggccctctgagcccagagacatgtggctttccagagaagaagaaa
aagccaaaggagaagaaagagcctaaggaacctaaaaagcccaaggaacccaagactccg
aaagctcccaaaacaccaaaagaacccaaggagaagaaagtgaaagcgaccaccccaaaa
cccaagagcaccaagaaagccagcagcaacaaagctgatccagagataagcactacaaag
aaaaaggaaggaaaacgtaagcgggaatccttagataattcagacttggaaaaatcaccc
cctccttcaccagaggaggaggatgatctgggcattcagaagaggcgttccagcaggcag
gttaaaagaaagcgatacacagaagaattggagttcaaaatctctgatgatgaagtggag
gatgtgggtgatggtacaggaagaaaatctccatcaaatacttcgcagacagagccgcag
gaggttcctgatgatggtcctgtggtagaaaaaatcatgagtgtgcacatgggaaagaaa
cagttggagtctggggaagaggtggatgtcgaagaattttacgtcaaattcaaaaatttc
tcctaccttcattgtcgatgggctgatttggaagagctggagaaagacaaaagaatccat
cagaagatcaagagattcagagccaagcagtctgtcaagttcctcagtgagatggaagat
gagcatttcaatccggactatgtggaagcagatagaatactggatgtatctgaaagcact
gatgataatggagagactgtctctcactatctggtgaagtggtgttcacttccttatgaa
gacagcacttgggaactgaaacaagacatcgaccaggctaagattgaggaatttgagaaa
ctgatggccagagaacctaaacagacacgtgtggagcgacctcctcccaatgactggcag
aaatctgaaagttccagggaatataaaaatggtaactcactcagggaataccagctggag
ggagtcaactggctgctgttcaattggtacaacgcacgtaactgcattttggcagatgaa
atgggtttgggaaaaacaatccagtccatcacatttctacatgagatatttctgaaggga
attcacagccctttcctgattattgcacctctatcaaccattcctaactgggagagggaa
tttcatacatggacagaattgaatgtgattgtctaccatggcagccaagctagcagacgg
atgatacaaacttacgaaatgaacttcagggattcacagggtcgtgtaataaagggagcc
tacaaattccatgctgtcatcaccacttttgaaatgatactgaccgactgcccagaactg
cgaaacattcagtggcgttgtgttgtcattgatgaggcccacagactaaagaacaggaat
tgcaagctgctagaggggctaaaaatgatggacatggagcacaaggttttgctgactgga
actcctttgcagaacactgtggaagagctattcagcctgttgaatttcttagagcctgaa
cgattcccttcagaaaccaccttcatgcaagagtttggagatctgaaaactgaggagcag
gtgcaaaaactccaggctattttgaaaccaatgatgttgagacgcctaaaggaggatgtg
gaaaagaacttggcaccaaaggaagaaacaatcattgaggtggagctaactaacattcag
aagaaatactaccgtgctattctggagaagaattttgccttcctttcaaaagggggacct
ggtggtggtggtagcagtggtggtgggaatgctaacatacctaaccttttaaacactatg
atggaacttaggaagtgctgtaaccacccttaccttattaaaggtgctgaagagaaaatt
ctggatgagttcagggagactcatcatacagattgtccagattttcacctccaggcaatg
gtccaggctgctggaaagctagtgctgattgacaagctgctgccaaaattgaaggctggt
ggccacagggtgcttgtcttttcccagatggtgcgctgcctggacattttagaggactac
ctcatccagaaaaggtacccgtatgagcgcattgatggtcgagtgaggggtaaccttcga
caggcagctatagacaggttttccaaaccagattctgacagatttgtcttcctgttgtgt
acaagagcaggtggtttgggtattaacttaactgctgcagatacctgcattatctttgat
tcagactggaaccctcaaaacgacttgcaggctcaggcacgatgccacagaattgggcag
aggaaagctgtaaagatatatcgtttgataaccaggaattcctatgaaagggaaatgttt
gataaggccagtttaaaactgggtctggataaagctgtcctccagtccatgagtgggaga
gagaattctgctaatgggatgcagcagctttcgaaaaaggagatagaagatctccttcgc
aaaggagcctatggtgccttgatggatgaggaggatgaaggatccaaattctgtgaagaa
gacattgatcagatcctgaagaggcgaacacagaccattactatagagtctgagggaaaa
ggatccacttttgcaaaggcaagctttgtagcagctggaaaccgaacagatatttcttta
gaagatcctgacttctggcaaaaatgggctaaaaaggcagagctggatatggaagcaata
catggaaggaacaacctggtgatagatacacccagaatcagaaaacaaaccagacacttt
agttcaatcaaggaggaggacatgatggaattttcagaactggaaagtgactctgaggaa
aagcctagtttgaaaccgcgtcgacctcaggacaaatcccagggatacccgaggactgag
tgtttcagggtagagaagaacctgcttgtttatggctggggaagatggaccgatatcctg
tctcatgggcggtttaaaaggcagttgacagaacaagatgtagaaaccatctgccgtgct
gtccttgtgtactgccttaatcattacaagggagatgaaaatatcaaaagcttcatttgg
gatctgatcacccctactgaagatgggcagaccagagcactccagaaccactcgggactg
tctgctccagtgcccagaggtcgcaaaggaaagaaggttaaaacccaatccgctcaacct
gtcttacagaaggcaggttggttggcaacctgcaatcctgacacactctttcaggaggat
agttacaagaagcacctgaaacaccactgtaacaaagtcctgctgcgagtccgcatgctg
tactatctcaggcaagaagttatcggcgatcaggcagacagtatcttagagggcacagat
tcaagtgaaatagatgtttggattcctcagccgttccatgctgaactgcctgctgattgg
tgggatagagaagcagataaatctctcctcattggagtctttaaacatgggtatgaaaaa
tacaactctatgcgggccgacccagctctctattttttggagagagttgggatgcctgat
gccaaggccattgctgcagaacagagaggagctgacattatggcagatggtgctgatggg
ggagactttgacagagaagatgaggatccagaatacaagccagccagaatgccctttaag
gatgaaatggatgagtttgcaaactctcctttggatgataaagatgaagccatggatgct
gaaattgctggcaaatcgggtgaaaacgcagaattgggaaaattgtactggcccagtgct
tccgccctgacaaccagactgagacgccttatcacagcttatcagcggagctacaagagg
gagcagatgagacaggaagccatgtctaagactgaccgccggagacgacggcccagggag
gaagtgagagccttggaagcggagagagaagccattataacagagaggcgtcaaaagtgg
accaggagagaggaagctgatttctatcgtgtggtgtcaacatttggtgttatatatgat
gcaagcaagcagcggtttgattggaaccaattccgagcctttgcgcgactggataagaag
actgatgacagtttggagaagtacttctactcctttgtggctatgtgcagaagggtgtgc
cgtatggccctgaaatcagatgaagagccaccagatcccacaatcatcattgagcctatc
acagaggagcgtgcctccaggactctgtatcgtattgagctcatgagaaagatcagagag
caggtccttccccacccagagctggaagagcggctcaagttatgccaggccagcctcgac
cttcccgagtggtgggagtgtggccgccacgacaaggacttgctggtgggcgcctgcaag
catggagtaagcagaacagactaccatatcctgaacgaccctaatctttccttcttgaag
gcccacaagaactttgctcagaacaaaagcagtggccagtttagcggcactcccctactc
agccagacccctttgctggatccatctacactcgcctcccagagcaaaaaggaagaggac
caagaccagcccataaagctagagggggctggggttcaggaactggatgagaacaaaact
gaagtgggatctccaaagacaaaggtggaaaaggagaatggggatgaaaaagcaagtaat
ggagagatggtacttgctgaagattcagaatctgctcttgagagagtcatatgtgaaaca
gaaacagccccagaggacccagaagcacttgcagagttggggccaaaatccctctctgag
aagggctctgaggaagatgaggataagatggatgatgatgataaatctgaggaatcctcc
caggctgaagctggtgtagcttcccaggttaagaactttgatgaagagagcaatgcatcc
cttagcacagctcgcgatgagactcgagatggtttctacgcagaggatggggaaacctcg
atggctcagattcttcacgatagatcgtactccttttccttctggcctaaggaccgggta
atgatcaatcggttggataatgtctgtgagacagtggtgaaggggaagtggcccgttaac
aggcgtcagctgtttgatttccctggcctgctccctggctacattccctcagttatagac
agccctttgcagaggaggagcttcgccgagctctccatggtgggccaggctagttacagt
ggcagtgaggacatcgcacagtctccacagatttcaaagcaggaagatgcactgagcatg
cctgttccccggcagcgcaggcgacgaaggaggaagattgagatagaggccgagcgggct
gtcaaaaggaggaatctgatggagatggtggcccagctacgagagtcccatgtggcctca
gagagccatgacaaagctgtggacttaacaaaggccttccgagaagcaaccggttctacc
tcaaatctgtctgctgttgcttccaagtttctgttgcccaatgcctccacccctactccc
aatgcctttaaaacacaatttgagttgctgcaagctggcttttcaggcacacccaccaga
cacctgatgaatggctcaatcctggatggggacctacccacaaaaaggaggagaggccgc
aggaaaaatgttgagggtcttgatctacttttcatggccaacaagagggcatcattaagt
gctgaggatgtagaagtgaccaaagcttttgaggagggagtgcagaccccaccgcaacca
ctgagaaacattccatctcctggtcaattggacccgaatgctcatatacctgtcattaac
ttagaaaatgggaccaggctggtgggagaaaatgctccccaaaacaaggacttggtagaa
tggctaaaacagcaccccacttacactgttgacatgccaagttatttaccaaagcctaag
cagaagagacatcgttgtcgaaaccccaataagatagacattaacactttgacaggagag
gagagggtgcctgtagtaaaccgcaggaatgggaaaaagatgggtggagctatggcacct
ccaatgaaggacctaccaagatggcttgaagaaaatccagaatttgtaattgcacctgac
tggacagatatcgttaagcagtcgggcttccttccagagtccatgtttgaccgccttctt
actggaccggtgatgcgagaggaaggaacaggtcgcagagggagaaggccaaagagtgaa
attgccaaggcggcggcacacgcagctgcagctgcagctgcagctgccacagcctcctct
tcaggcatcaaccccctgctgatgaacagcctgttcgcagggatggacctcaccagtttg
cagaaccttcaaaacctgcagagcttgcaactggccggcctcatgggattcccgcctggc
ctggccacagcctctgtgggagggggaggtgatgctaagcatgcagccggtatgctgccg
ctgatgctacctgggatggcggggctgcccaacatgtttggactgggtgggctcttcaac
aacaacttggctgctgcagcagtagctacttccagcactgcctccacaacaggggaggca
gaggaagggacatccaagatcgaagagaaggatgaagagagtgaagataaggactctgac
aagtcttgtgaggtctccagtgaaacgaaccgcgaaggctctgctaatgctgctgctgtt
tctgcagcagcagctgctactgctgcagctgctgcgatgtccaccaaccctctagccttc
aacccatttctgctatccactatggctcctggtctcttctacccctcaatgtttctgccc
cccagcttgggagggctctccctccatgggttctcacaggccacactggctggactgcag
aatgctatgggcggaagtggtagaagcaaggataaagaagctgacactgatgccgatctt
ggtaccaaggaggaagatggggtaaacgccctggaagacagtgatacggatgagagccag
aacaaaactgcagattcctcagtgctagaagatgagttgggcccctgtgaggaggtggat
tcgcttgacggtgcagaggtggtggaagaggatgtcaatgatgaataa
DBGET
integrated database retrieval system
