Polyodon spathula (Mississippi paddlefish): 121314403
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Entry
121314403 CDS
T07273
Symbol
scrib
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121314403 (scrib)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
LRR_8
LRR_14
PDZ_6
LRR_4
PDZ_2
LRR_LRWD1
AbLIM_anchor
LRR_9
Motif
Other DBs
NCBI-GeneID:
121314403
NCBI-ProteinID:
XP_041103562
LinkDB
All DBs
Position
4:complement(30535373..30672941)
Genome browser
AA seq
2071 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCSLQTVPEEIYRYNRSLEELLLDANQLRDLPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKSLEIADFSGNPISRL
PDGFTQLRSLAHLALNDVSLQALPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELDVLPDTLGALPNLRELWLDRNQLYSLPLELGNLRRLVCLDVSENKLEQLPKELS
GLVALTDLLLSQNLLETIPDGIGCLKQLSILKVDQNRLTHLTDSIGDCENLTELMLTENL
LTILPRSVGKLKKLTNLNVDRNRLTALPLELGGCSSLNVLSLRDNQVTKLPAELANATEL
HVLDVAGNRLLNLPFALTNLNLKAMWLAENQSQPMLKFQTEDDENTGEKVLTCYLLPQQP
SPSLENLLQNSVDDSWTDTNLNRVSVIQFQEEAKTEEEDEEAAAEKRGLQRRATPHPSEL
KVMKKVIEDRRNEAYTAKPDGGLESPDNEEKRLSALSNQSNDSQASNSTASAGSESCDSA
EHERRSNIVGVTPDVEEQVDEEEGLDDEMEVEYIEPTVHFAEEPIIRGGEEDEDGEEEPA
VPMEKQRLIRKDTPHYKKHFKITKLPKPETVAALLRGLSVEGVDHHEFRAPPHCAQEEGR
EGEQEQEGGLEVEGRMSDKTNTALQPFKGVSFDQVNNLLIEPARIEEEELTLTILRQTGG
LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAALSGVKVGDKLLEVNGVDLQGAEHHTAV
EALRSSGMAVSMSVLRESMVEPENAITTTPLRPEDDYFPRERRSSLPFPSDEEPERGLQE
RLSTCLLRNDKGLGFSIAGGKGSTPYRTGDTAIFISRIAEGGSAHRDRILHVGDRVISIN
GVDMTEARHDQAVALLTGTSPTITLVVERDVSEGVAVLGGSPALQRARPHSPPPPTPSEN
NDQEDANEDSPQDNPLNSRALEDEYPIEEVYLVKAGGPLGLSIVGGSDHASHPFGISEPG
VFISKVIPQGLAAQSGLQVGDRILAVNDIDLRHATHQEAVRALLSNKQEIRMLVRRDPPP
PGMQDISIEKLPGEKLGISIRGGAKGHAGNPFDPSDEGIFISKVSSSGAAARDGRLKVGM
RILEVNNHSLLGMTHTEAVRILRSIGDTLAVLVCDGFDPRDAGVIDASPGVIANPFATGV
GRKNSMESISSIDRDLSPEEMEIIQKEMEMVRESTQWEKEELEKVEQMRREREEANRLLE
EEAESFSAGPLKLDYKTLAALPNTSLQKVSRLYPCGTHSVTMEAPKPANNSSLDPLMFRN
GELTGQGQGNSRRSLFQTESRILNPAALPVCIPCQNTVVEAKLVQNTPEPQVTFATKKTA
VSHIPMQESPPIVKHEVPPQEGEEEESLVDSQPISFSNNPFLIANQKGKGKPAEAQILSG
PPVGYGKRGLLQTSLYTKGPSSEPAGVNSTSWEAPCSPSTQAPVSTAASCTGRETRFATI
NFLSSTTPKENTSTKPGVIHPLSRVCQNTLPAKQDGRNSPNPFQHGPASSETLSSPRDTS
PLSPDKVPANVKQAYKTFAAVPTSHPVLEQQEVFIQRNNVQPKPSPEQDLENDVFDSVME
LGGNPPCGVVRQRPPATRSLSTDVPSPLGESTLRREYLSLSAVPLVTRPSLDLEVASQSP
SGLDSPEQRSFRDRQKYFEIDVKQHLPDSKPKPRVSLVAEDDLKKMREEEVRRIEQRTRG
LPVEEEEEEEEEDLDKQMAAMKAHGKVVIEGVEYKIERVDNRSANSPSTGESLVDGKRES
QRNSLEDGFRPEQTPNSMTGLSPVYPGESGAPIRTAKAERRYQERMRMQSPELHSAQDKD
LSPAEKRALEAEKRAMWRAARPRGLEDDIKQYEQDLAKKLYQSRQRASQAHNMSPDPAAS
EHRMKSLEQDALKAQMVIAKSKEGKKRNTLEQLAESPSPAPTPSPTQLEDYSPRSVTSPG
RLSQTEKKFDYRQFAAIPSSKPVYDIQSPDLTDDIQYMDDTTNSAAHRGEEEEAEGYVSL
PTTTALEEMALYSNKRKLRHGRRSLETAVPT
NT seq
6216 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagtgtatccctctgtggcgctgtaaccgccacgtcgagtctgtcgacaagcgg
cactgctccctgcagacagtgccagaggagatctaccgctacaacaggagtcttgaagaa
ctgctgttggatgctaaccagctgagggaccttcccaagcctttctttcgcctgctgaac
ctgcggaagctgggcctcagcgacaatgagatccagagactccctcccgaggttgcaaac
ttcatgcagctggtcgagctggacatctccaggaatgacattccagagatcccagagagc
attaaattctgtaaatcattagaaattgcagacttcagtggaaaccctatttcaaggctc
ccagatgggttcacacagctccgcagcctcgcgcacctcgccctcaatgacgtctctctg
caagcactgcccaacgacatcggcaacttggcaaaccttgtaacactggaactccgagaa
aacttgctaaaatccctgcctacgtcgctgtcattcctggtgaaactggaacaattagac
cttggcagcaatgaactggatgttttgccggacactttgggagcgctgccaaacctgcgg
gagctgtggctggacaggaaccagctatattcactgccactggagctgggtaacctgcgc
cggctggtgtgtctggacgtgtctgagaacaagctggagcagctacccaaggagctgagc
ggcctggtggcactgacagacctgctgctgtcccagaacctgcttgaaaccatccccgac
ggcattgggtgcctgaaacagctctccatcctgaaggtggatcagaaccgactgacccac
ctgacagactcgataggggactgtgagaacctgactgagctcatgttgactgagaacctc
ctcacgattttgccgcggtctgtagggaagctgaagaagctgacgaacctaaatgttgac
cggaaccggctgaccgccctgcccctggagctgggtggctgctccagtttgaatgtgctc
tccctgcgagacaaccaggtcaccaagctgccggccgagctggcaaatgccactgagcta
cacgtgctggatgtggccgggaacaggcttctgaacttgccctttgccctgaccaacctc
aacctgaaggccatgtggctggcagaaaaccagtcccagcccatgctcaagttccagaca
gaagacgatgagaatactggggagaaggtgctgacctgctacctcctaccgcagcagccc
tcacccagcctcgagaacctcctgcagaacagtgttgatgacagctggacagacaccaac
ctgaaccgtgtcagtgtgatccagttccaggaggaggccaagactgaggaggaggacgaa
gaggctgcggccgagaaaagggggctgcagcgacgagcgactccccaccccagcgagctg
aaagtaatgaagaaggtgatcgaagaccgcagaaacgaggcctacactgccaagcctgac
gggggactcgagtctccagacaatgaggagaagaggctgagtgcactgtccaatcagagc
aatgactctcaggcctccaacagcacggcgtcggctgggtctgagagctgtgattctgca
gaacacgagaggcgatccaacattgttggcgtgacaccagacgtggaggagcaggtggat
gaggaggaggggcttgatgatgagatggaggtggagtacattgagccaacagtgcacttt
gctgaggagcccattatccgcgggggagaggaggatgaggatggggaggaggagccggcc
gtccccatggagaagcagcggctcatccgcaaggacacaccgcactacaagaagcacttc
aagatcactaagctgcccaagcccgagactgtggcggcgctgctgcgagggctgagcgtg
gaaggggtggaccaccatgagttcagggctccaccgcattgtgcccaggaggaggggcgg
gagggggagcaagagcaggagggggggttggaagtggagggcagaatgagtgacaagacc
aacacagcactgcagccgttcaagggggtgtcgtttgatcaagtcaataatctgctgatt
gagcctgctcgaattgaggaggaagagctgacgctaacgatactccgtcagactgggggt
ttagggatcagtattgctgggggcaaaggctccacaccctacaaaggcgatgatgagggt
atcttcatctccagagtatccgaggaaggtccagctgcactttcaggagtaaaagtggga
gataaattattagaggtcaatggcgtggacctgcagggtgcagagcaccacacggcagtg
gaggctctgcgcagctctggcatggcggtgtccatgtcagtgctgcgggagagcatggtg
gagccggagaacgccatcacgaccacgccactacggccggaggatgactacttcccccgt
gagcgccgcagcagtctccccttccccagtgacgaggagcctgagcgcgggctgcaggag
cgcctctccacctgcctcctccgcaacgacaaggggttgggcttcagcatcgcagggggc
aagggctccacgccgtaccgcactggagacactgccatcttcatatcccgaattgcagag
ggtggttctgcccatcgagacaggattcttcatgttggagacagagttatttctatcaat
ggtgtagacatgacagaagccaggcatgatcaggcagtagctcttcttaccggcacatcc
cccaccatcactttggttgttgagcgggatgtctcagagggcgttgcagtactagggggg
tcccctgccctgcaacgtgcacgcccacactccccgcctcctcccaccccctcggagaac
aacgaccaggaggacgcgaatgaagactctccgcaggacaacccgctgaacagcagagcc
ctggaggacgagtaccccatcgaggaagtctacctggtgaaggcaggcggccctctaggg
ctgagcattgtgggaggcagcgatcatgccagccacccctttggcatcagtgagccaggt
gtattcatctcaaaggtgatccctcaggggctggctgctcagagtgggctgcaggtgggt
gacaggatcctagcggtgaacgacatcgacctgcgccacgccacgcaccaggaggccgtc
agggcgctgctctcaaacaagcaggagatccgcatgctggtgcgcagagatcctcccccg
ccaggcatgcaggacatttcaattgagaaactacctggggagaagctggggatcagtatc
cgaggtggagccaagggccacgctgggaacccctttgacccttccgacgagggcatcttc
atctcaaaggtgagctcgagcggcgcggcggcccgggacggcaggctgaaagtgggaatg
cgcatcctggaggtgaacaaccacagcctgctgggaatgactcacactgaggcagtgcga
atcctgcggagcatcggagacacgctggctgtgctggtgtgcgacggcttcgaccccaga
gacgccggtgtcatcgatgcgtcccctggtgtcatcgctaacccctttgccactggcgtt
ggtcggaagaacagcatggaaagtatctcctctatcgacagggacctcagtccagaggaa
atggagatcatacagaaggaaatggagatggtgcgggagtctacgcagtgggagaaagag
gagttggagaaagtggagcaaatgcgcagggagcgtgaggaggctaaccgtctgctggag
gaggaggctgagagtttcagcgcagggcctctaaaactggactacaaaacccttgcagcc
cttcccaacaccagcctacagaaagtcagcaggctttatccttgtggtacgcattctgtc
acaatggaggcacccaagccagccaacaactcttctctagacccactaatgtttagaaat
ggggagctcactggacaggggcaggggaactctcggaggagcctgtttcaaactgagtct
cgaatcctgaacccagcagccctgcctgtctgcatcccatgccagaacacagtcgtggaa
gccaagctagtccaaaatacaccagagcctcaggtcacgtttgccactaaaaagacagcg
gtttcccacattcccatgcaagagtcgccccccatagtgaaacatgaagtccctccccaa
gagggggaagaggaagaaagtctggtggactcgcagcccatttccttcagcaataacccc
tttctcatagccaatcagaaggggaaaggcaagcccgccgaagctcagattctttcagga
ccgccagtcggctatggaaagcggggcctgctgcagaccagcctgtacactaagggtccc
tcctccgagcctgctggcgtgaacagcaccagttgggaagccccctgctcccccagcaca
caggcacctgtgtccactgctgcttcttgcactggacgggaaacccgttttgcaactatt
aatttcctctcttccaccactcccaaggaaaacacatccacaaaaccaggtgttatccac
cctctatctagagtgtgtcagaatacgcttccagccaaacaggatggccgtaacagtcct
aaccctttccagcatggccctgcctcttccgagacactcagttcgcctcgtgacacctct
cccctctcacctgacaaggtccctgctaatgttaaacaggcttacaaaacctttgctgct
gttccaaccagccacccagtcctggagcagcaggaggtctttatccagaggaataatgtc
cagcccaagccttcacctgagcaggacctggagaacgatgtttttgacagtgtcatggag
ctgggagggaaccctccatgtggcgtagttcgtcagaggccccctgccacccgcagcctc
tcaacagacgtgcccagccctctgggcgagtcgaccctgcgtagggagtatctgagcctg
tctgcagtgccccttgtcaccaggccttccctagaccttgaggtggcatcccagtcaccc
agtgggctggacagcccggagcaacgctcgttcagagaccggcagaagtacttcgagatc
gatgtgaagcagcacctaccagacagcaagcccaaacctcgcgtctcgctggttgccgag
gacgacctcaagaagatgagggaagaagaagtccggaggatcgagcagcgaacccgggga
ctgccagttgaggaggaggaggaggaggaagaggaggaccttgacaagcagatggcggcg
atgaaggctcatggcaaagtggtcatcgaaggagtggagtacaagatagagagggtggac
aaccggagcgccaactcccccagcacaggtgagtccctggtggatgggaagagagaatcc
cagagaaactcccttgaagatggcttcagacccgaacagacaccaaactctatgactgga
ctcagcccggtgtacccaggggagtcaggagcccctatccggactgccaaggcggagcgg
cggtatcaggagcgaatgcgcatgcagagcccagaactgcacagcgcccaggacaaggac
ctctccccagctgagaaaagagcactggaggcagagaaacgggccatgtggagagcagcc
agacccagagggctggaggatgatattaaacagtatgagcaggatctggctaaaaagctg
taccagtcaagacagagggcatctcaggcccacaacatgagccctgacccagcggccagc
gaacacaggatgaagtccctagagcaggatgctctgaaggctcagatggtcatcgccaag
tccaaggaggggaagaagaggaacactctggagcagctggcagagtccccgtccccggcc
cccacaccctcccccacacagcttgaagattacagccccaggagtgtgacatcaccaggg
agattgtcccagacagaaaagaagtttgactaccgacagtttgcagctattccttcttcc
aaacctgtatacgacatccagtcccctgacttgacagatgatatacagtacatggatgac
actaccaacagtgcggcgcaccgtggggaggaggaggaggctgaaggctatgtctcccta
cccaccaccacagcactggaagaaatggctctctacagcaacaagcgcaaactacggcac
ggtcgtcggagcctggagacagctgtccccacgtag
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