Polyodon spathula (Mississippi paddlefish): 121314448
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Entry
121314448 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase mib1 isoform X1
KO
K10645
E3 ubiquitin-protein ligase mind-bomb [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121314448
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121314448
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121314448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
SH3_15
Ank
Ank_5
MIB_HERC2
Ank_4
Ank_3
zf-C3HC4_3
ZZ
Ank_KRIT1
zf-C3HC4_2
Prok-RING_4
Sina_RING
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
121314448
NCBI-ProteinID:
XP_041103667
LinkDB
All DBs
Position
4:complement(33960732..34055563)
Genome browser
AA seq
1006 aa
AA seq
DB search
MTTGRNNRAMMEGVGARVVRGPDWKWGKQDGGEGHIGTVRSFESPEEVVVVWDNGTAANY
RCSGAYDVRIYDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTACYHGEKHHL
RHRFYRITTPGSERVLLESRRKSKKITARGIFTGGRVVRGVDWQWEDQDGGNGRRGKVTE
IQDWSAASPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAKGGSFYRDHCPVLGEQNGN
RNPGGLQIGDLVNIDLDLEIVQSLQHGHGGWTDGMFETLTTTGTVCGIDEDHDIVVQYPS
GNRWTFNPAVLTKANVVRSGDVTAGAEGGTSQFLVGDLVQICYDIERIKLLQRGHGEWAE
AMLPTLGKVGRVQQIYSDSDLKVEVCGTSWTYNPAAVTKVAPAGSAVTSASGERLSQLLK
KLFETQESGDINEELVKAAANGDLAKVEDLLKRPDVDVNGQCAGHNAMQAASQNGHVDVL
KLLLKHSVDLEAEDKDGDRAVHHAAFGDEGSVIEVLHRGGADLNARNKRRQTPLHIAVNK
GHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDMLSVLLEAGADVTITNNNGFNAL
HHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGSASLD
IQNANQQTALHLAVERQHTQIVRLLVRAEAKLDIQDKDGDSPLHEALRHHTLSQLRQLQD
MQDVGKEDSPWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLTIRNKKGQSPLDLC
PDPSLCKALAKCHKEKSSGQVGSRSPSLISNDCETLEECMVCSDMKRDTLFGPCGHIATC
SLCSPRVKKCLICKDQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQC
RAVVERRTPFIMCCGGKGMEDSTDDLTSANIPALQRDKDNTNVNADVQKLQQQLLDIKEQ
TMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKGIERRILLY
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccggcaggaataaccgagccatgatggaaggcgtgggtgccagggtggttcgg
ggtccagattggaaatggggcaaacaggatggcggagagggccatattggtactgtgcgc
agcttcgagagcccagaagaagtggtggtagtctgggataacgggactgctgccaactat
cgctgctcgggggcgtatgatgtccgaatatacgacagtgcgcccacaggtatcaagcat
gatgggaccatgtgtgatacttgccgtcagcagccgattattggtatccgttggaagtgt
gcagaatgtacaaactatgatctatgcacagcttgttaccatggagaaaagcatcatctg
aggcacaggttctacagaatcaccacgccgggaagtgagagggttctgcttgagtctcgc
cgcaaatctaaaaagatcactgccagggggatcttcactggcggccgggtggtgcgagga
gtggactggcagtgggaggaccaagacggaggcaacgggcgccggggcaaggtgacagag
attcaagactggagtgcagccagccctcacagtgcagcatatgttctgtgggacaatgga
gccaagaacctttatagagtggggttcgagggcatgtctgacttgaaatgtgttcaagat
gcaaaaggggggtcattttacagagaccattgccctgtactaggtgaacagaatgggaac
cggaacccagggggcctgcagattggcgacctggtgaacattgacctagatttagaaatt
gtgcaatccctgcagcatgggcatggcgggtggactgatgggatgtttgagaccttgacc
accacaggcacagtctgtggcattgacgaagatcatgacattgtggtgcagtaccccagt
ggaaataggtggacattcaaccctgccgtgctgacaaaggcgaatgtggttcggagtgga
gatgtgactgcaggtgcagaagggggcacctcccagttccttgtgggagacctggttcag
atctgctatgacattgagcgaatcaagcttctccagagaggacatggcgagtgggcagaa
gctatgttgccaactttggggaaggttggtagagtccagcagatctattccgacagtgac
ctgaaggtggaggtttgcgggacatcctggacatacaatcctgcagctgttaccaaggtg
gccccagcaggctctgctgtgaccagtgcatctggagaacgcctgtctcagcttttaaag
aagctctttgaaacacaagaatctggagatattaacgaagaactcgtaaaagcagctgcc
aatggggacctcgccaaagttgaagacttgctaaagcgcccagacgtggatgttaacgga
cagtgtgctgggcacaacgctatgcaggcagccagtcaaaatggacatgtggacgtatta
aaattactgctcaagcacagcgttgacttagaagcagaggacaaagatggagacagggct
gtgcaccatgcagcttttggagatgaagggtcggtaattgaggttttgcacagaggaggt
gcggatctgaatgctcgaaacaagcgcagacagactcctttacacattgcagtaaataaa
ggtcatcttcaagttgttaagactttgctggactttggctgccatcccagtcttcaggac
tctgaaggagacacccctcttcatgacgccatcagtaagaagcgggatgatatgctgtct
gtgcttttggaggccggggctgacgtcaccatcacaaacaacaatggatttaatgcgctt
catcatgctgcgctgcgagggaaccccagtgctatgcgggttctgctgtctaagctgcca
aggccctggatagtggatgagaagaaggatgatgggtacaccgccttgcatttagcagct
ctcaacaatcacgtggaagtagcagagttactggttcaccagggcagcgccagcctggac
atccagaatgctaaccagcagactgccttgcacctggcagtagaacgccagcatacccag
attgtcagactgctggtccgtgcagaagcgaagctggatatccaggataaagatggagac
agtcctctgcacgaggctcttagacaccacaccctttcccagctccgccagctccaggat
atgcaggatgttggcaaagaggatagcccttgggagccatcgaaaaacactttaataatg
ggcctggggactcaaggtgctgagaaaaagagtgctgcatcgattgcctgtttcctcgca
gccaatggagcagatctgactatcagaaacaagaaggggcagtctccactggatctctgc
cctgatcccagcctctgcaaggcattagcaaaatgtcataaagaaaaatcaagtggacag
gttggctctcgcagcccctcgctcatcagcaacgactgtgaaacgcttgaggagtgcatg
gtgtgctctgatatgaagagggacaccctcttcgggccctgtgggcacattgccacctgc
tcactgtgttctccacgggtcaagaaatgcctcatatgcaaggaccaagtccagtctaga
acaaagattgaagaatgtgtggtatgttcagacaagaaggcagctgtgctcttccagcct
tgtggccacatgtgcgcctgtgagaactgcgccagcctgatgaagaagtgtgtgcagtgt
cgagctgtggtcgagcggagaactcctttcattatgtgttgtggtgggaaaggtatggaa
gattccactgatgatcttaccagcgcaaacatccctgctttacagagagacaaggacaac
acaaatgtcaatgcggacgtgcagaaactgcagcagcagctgctggacatcaaggaacag
acgatgtgcccagtctgcctggatcgactgaagaatatgatcttcatgtgtggccatggc
acgtgccagctgtgcggtgaccgaatgagtgaatgccccatctgtcgcaagggtattgag
cgcagaatcctcctctactag
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