Polyodon spathula (Mississippi paddlefish): 121314480
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Entry
121314480 CDS
T07273
Name
(RefSeq) laminin subunit alpha-1-like
KO
K05637
laminin, alpha 1/2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121314480
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121314480
09142 Cell motility
04820 Cytoskeleton in muscle cells
121314480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121314480
NCBI-ProteinID:
XP_041103740
LinkDB
All DBs
Position
4:35715081..35785109
Genome browser
AA seq
3139 aa
AA seq
DB search
MKLVTNQEGKTREKGDSGWKAKQIITSICEKSFPVIYCASKTTPHTEGKMKCYLLIVLMI
CASSVECNKRGLFPAILNLASSAEITANASCGETGPEMFCKLVEHVPGRPIRNPQCRICD
STSPNPRERHPISNAIDGTNNWWQSPSIKNGRQNHWVTITLDLRQVFQVAYIIIKAANSP
RPGNWILERSIDGIEFQPWQYHAISDTECLTRYNVTPRIGPPTYKRDDEVICTSYYSRLV
PLEHGEIHTSLINGRPSADDLSPALLEFTSARYIRLRLQRIRTLNADLMTLSYRDPKDVD
PIVTRRYYYSIKDISVGGMCICHGHAQSCPWDETTKKLQCVCEHNTCGESCNECCPGYHQ
KPWKPGTLSVGNTCEKCNCHNKTEDCYYNQTVANSKMSMNIDGQFVGGGVCIDCSQNTAG
NNCETCVDGYYRPHKVSPYDENPCVECGCDLNGSHHPVCIKDDSHADLQNGLLPGKCFCK
EGYAGEKCDRCSFGYRGYPYCVKCNCSLIGSIHLDPCVEQCTCKENVMGENCDLCKRGYY
NLQKSSPEGCTECFCFGVSDVCESISWPLTQVLNVDGWLMPVRPIPITSGARFDHDDSNH
ISKESRTLPPQSSWSAPESFLGNKLTAYGGYLNYTLSYDVPVESLHLQLMSNFDVVIEGN
GKTLQTRLNAQLLLQPYKEQTVAVEILPRNFIDFYTSRAVERDRLMTVLANLTRLQIWAS
YNNTSDAVLRLSSVSLDTATVNAIDLKPAMDVEHCECPWGYAGTSCESCSPGHYRVDGIL
FGGICRLCECNGHATECDIHGICSDCKHNTIGPHCEQCIPGFYGDPSDGMPDDCQVCACP
LNILSNNFSPTCHLDSAGEVMCDQCVPGYEGPRCERCANGYYGDPTVPGELCVPCDCNGN
VNPLEPGHCDTRTGECLKCVENTTGSHCERCADGYFGDAVVAKNCQDCGCLVNSSYSSVC
DLESGKCECRPNVTGEKCDQCLPGHFGLSSGLGCQTCNCNLAGSLSDSCDDVGQCPCVPG
VAGEKCDRCAHGFYDFQDDGCTPCDCAHTYNNCNTETGQCICPPHTAGVKCELCEANHWG
HDSKLGCKPCDCSLVGSSSSQCDLYTGWCQCNLEFGAEKCNKCALGFRAYPECTACNCSI
IGTREEYCDEKQGVCGCEDDSSTCSCKVNVVGPGCDECKLGTFALSADDPLGCTPCFCFG
VSETCEELGGLVWIPIILTPDQESLRVVSQSDLSGTLDGVFLQSPDILLDAALVKQSLHT
EPFYWRLPEQFQGNKLLSYGGKLRYTAAFYALEGSGISNFDPQLLIKGGRTSKLIIYRDV
PAPDNGVKTNQEIDLKEREWKYFNSVSDQAVSHSDFMSVLGNIQYILIKASYGSDLQQSR
ISNISLEIAVDSDEMNAGRETARGIESCKCPSGYAGLSCQECAPGFYRQRLTELNVRGSR
PLIEPCVSCRCHNHSQTCDLDTGKCQGCQDNTAGDHCDLCAPGYYGKVRGSISDCSLCAC
PQGNTNSFSPTCVLEGVDDFRCDACMPGYEGQYCERCTLGYYGNPNEPGGSCQLCKCNPT
GSVHNLCDKLSGHCMCKPGVRGLLCDECEPRHILMGTECMSCNDNCTGVLLNDLENLELS
IQSVNLTGVILAPYSLLASLENTTDEIKMLLSPERNSSFLLKKGEEQLSGLTKDTDQLHQ
KTTQANGDGQDLNKSAERMVNQSKELLDSITKVQTAIQALTELGSNLNDTLDNNLELTNS
TQLLEEVSAVLEKMRNKDFTQQHQSVTYEFKAAQALLLWVQREFEKPQKDVKELKERIVA
ILSEHSSKLQDAQNLVNESFTKANKTNPLLHAMSNNLAAFDDKKQNVSSNHFLTTEMIEE
AQAMMTEGLNIATDVNATSQLEGHKDELALWNPKLRKQVDYIVMQLTKRSVLDLVYKAED
HAAGLKKLADSLHSALSGVRNVSFDATNAAQANSNIKVSIEKAEGLAEQLNNTAATAWSL
ALCADGSLKNAGVKSLQESSRLLSEATDLNNKTNGLMSDLKGLKEQMNKIQHNAQNKSKQ
LSEPLQLLSSIPSNITVKVLEAKEHAMGANVSAVAALQNLEDFSQKLEETSSAVTRANET
VKRTNELFSDSAKTANAAEKRVKEVETQTNLLFERLKPLKMLGDNLSRNLSEIKELIDQA
RKQAASIKVAVAAEQDCVRAYKADISSSNYNTLTLIVKTSQPDNLLFYLGSSTSVDFMAL
EMRRGKVSFLWDVGSGFAKLEYPDIQINNDKWHRIHATRFGKTGSITVQELKSSQTSTVK
TATSPGTSTVLDVNQSTLVFVGGLGGQIKKSSAVKMTHFKGCMGGASLNGNNIGLWNYAE
REGKCRGCFMSPQDEDTSFHFDGSGYSIVEKALRSTVTQIVMLFKTFSPNGLLLYLASNG
TRDFTSVELVDGKVRLTFELGSGPLSLITDKTYNSGNWYKIAFHRTKQKGYLAVMDAYIP
TNRETKEGTTSGSASDLNRSDKDPIYIGGLPRSRPVRKQLVTRSYVGCIKNLEIARSNFD
LLKESYGVKKGCVLEPIHSVTVLNEGYLELHPMSLAPESELMATFATKNDTGIILAGISK
GGKRRRRQTHLPFFAVMLISGHVEVHMNTGEKGHTKKAVIKSPAGSYSDGEDHSVILHRS
ERLLTVQVDEGNLTEMRLSPLAESSPLNVSSFYIGGVPPGDGADMLKTGKSFYGCIRNLG
YNMELLDLTTAVSYHNVDMDSCLLEERPKPVIQPEEGDLESELQPSPTPARPVSTIEQSS
KTQDPAKCVEEEIPAIVPNAQQFGLTKNSHMVLSLDESTVRRKFSIQLTFRTFASSGLVY
FMSHQNQVDYAALQLMEGHLYFIYDLGKGSAKVTLPHVVNDGQWHTVKTDFAKKKATITV
DGKESSPAGAVGDTLDVEGKLYLGGLPVDFTAKKIGNVTHSVPACINNVMLNNKPLDRDN
PISVYAVNRCYETAQEGTHFDGTGFASLAKGYKVRSDLIVSLEFRTSLQNGVLLGISSAK
VDAVGLELVSGKILFHVNNGAGRITTTYSPSDSSSLCDGKWHKLQANKSKHWFSLTIDGQ
TVRANNPYPQSTSAETNNPIYVGGFPANVKQNCLSIKTPFQGCMRNLRLVKGEHSEAYDF
SGAFELRGVFPNSCPGAEH
NT seq
9420 nt
NT seq
+upstream
nt +downstream
nt
atgaagctagtgacaaaccaagaaggaaaaacaagggagaaaggggattctggttggaaa
gcaaaacaaataataacaagtatttgcgaaaaatcattccctgtcatctactgtgcaagt
aaaactactccacatacagaggggaaaatgaaatgctacttattaattgtgctgatgata
tgcgcatcctccgtggagtgtaataaaagaggtctttttcctgccattctcaatttggcc
agcagtgctgaaataactgccaatgccagctgtggagagactggccctgagatgttctgc
aagctggtggagcatgtcccaggcagacctattcgcaacccacagtgccggatctgtgac
agcacaagtccaaatcccagagagcgacatccaatctcaaatgcaatagatggcaccaac
aactggtggcagagccccagcatcaagaatggcaggcagaaccactgggtaacaatcacc
ctggatttgcgacaggttttccaagtggcatatataatcatcaaggctgccaactctcct
cgacctgggaactggattctggaacgctctattgatggcatcgagtttcagccttggcag
taccatgctatcagtgacacagagtgcttaacacggtacaatgtcacaccaaggatagga
ccaccgacctacaagagggacgatgaagttatctgcacatcctactattccaggctggtc
ccgctcgaacatggagagatccacacatccttgatcaatggcagacctagtgctgatgac
ctcagcccagccctgttggaattcacctcggctcgatacatccgccttcgcctgcagaga
attagaacactcaacgctgacctcatgactctcagctacagggaccccaaagacgtagac
ccaattgtaacccgcaggtattactactccatcaaggatatctctgttggaggaatgtgt
atctgccatggccatgctcaaagctgtccctgggatgaaacaacgaagaaactacagtgt
gtatgtgagcataatacttgtggggagagctgtaatgaatgttgtcccggctaccatcag
aaaccatggaaacctggaactctctcagttggcaacacttgtgaaaaatgcaactgtcat
aacaaaaccgaagactgttactacaaccaaactgtggccaatagcaagatgagcatgaat
attgatggtcagtttgttggtggaggtgtttgcattgactgttcccagaacaccgctggc
aacaactgtgaaacctgcgtggatggctattacagaccacacaaggtatctccttatgat
gagaatccatgtgttgagtgtgggtgtgatttgaatggctctcaccatccagtttgcata
aaggatgacagtcatgcagatctccagaatggtttgcttccagggaagtgtttctgcaaa
gagggctatgctggagagaagtgtgatcgctgttcctttggttaccgtggatatccctat
tgtgtgaagtgtaactgcagtttgataggcagtattcatttagacccctgtgtggagcag
tgcacatgcaaggaaaatgtaatgggtgaaaactgcgacctctgtaaacgagggtattac
aaccttcaaaagagcagccctgaaggctgcacagagtgtttctgtttcggagtgtccgat
gtgtgtgagagtatttcctggcctctaactcaggttttaaacgttgatggttggttgatg
cccgttcgtccaattcccattaccagtggcgccagatttgatcatgatgactcaaaccac
attagcaaagaaagcaggacattaccaccccagtcctcctggtcagctcctgaaagcttt
ttgggaaacaagctcactgcttatggagggtacttgaactatacattatcttatgatgtt
cctgtggagagcctgcacctccagttgatgtctaattttgatgtcgttattgagggaaat
ggcaagactttgcagacaaggttaaatgctcagttgctgctgcagccctacaaggagcag
actgttgctgtggagatcctgccaaggaacttcattgacttctacaccagtagagccgtg
gagagagacaggctgatgactgtcctggcaaacctgacccgtctgcagatttgggcctcc
tataacaacaccagcgatgcagttctaaggttaagttctgtatctttggacacagctact
gtgaatgctattgatctaaagcctgcaatggatgtggagcactgtgagtgtccatggggt
tatgctggaacgtcttgtgagtcttgcagccctggtcattatcgagttgatgggattctg
tttggaggcatttgccggctgtgtgaatgcaatggccacgccactgaatgtgacattcat
ggcatctgctctgattgcaagcacaacaccatagggccccactgtgagcagtgcatccct
ggtttctacggtgacccatccgatgggatgcctgatgactgccaggtctgcgcctgtcca
ctcaacatcctatccaacaatttcagccctacctgccacctggacagtgctggagaagtg
atgtgtgatcagtgtgtgccaggctatgagggacctcgctgtgaaaggtgtgcaaatggt
tactatggggatcctactgtgccaggggaattgtgtgttccttgtgactgcaatggcaat
gtgaacccacttgaacctggccactgtgacacacggactggagaatgtctgaaatgtgtt
gagaacacaacaggaagccactgtgagaggtgtgcagatgggtactttggagatgctgtt
gttgctaaaaactgccaagactgtggctgccttgtgaacagttcctactccagtgtctgt
gatctagagagtggaaagtgcgagtgcaggcccaatgtcactggggagaaatgcgaccag
tgtctgcctggtcactttggcttgagcagtggtcttggttgtcagacctgtaactgcaat
ctggcggggtcactctctgacagctgtgacgatgtaggacagtgtccctgtgtcccagga
gtggccggagagaagtgtgacaggtgtgcccatggcttttatgacttccaagatgacgga
tgcacaccctgcgactgtgcccacacctacaacaactgtaacacagagacgggccagtgc
atctgcccacctcacactgcaggagtgaaatgtgagctctgcgaggccaaccactggggg
catgattctaaactgggatgcaagccgtgtgattgcagtctcgttggctcgtccagctct
cagtgcgacctgtacactggttggtgtcagtgcaatttggagttcggggccgagaagtgt
aacaagtgtgccctgggattcagagcctacccagagtgcacagcctgcaactgcagcatt
attggtacaagagaagagtactgtgatgagaagcagggtgtgtgtggctgcgaggatgac
tcgagcacatgttcttgcaaggtaaatgtggttggccctgggtgtgatgagtgtaagctg
gggacctttgccctttctgctgatgacccgctgggttgcaccccttgcttctgctttgga
gtgtctgagacatgcgaggaactcggagggcttgtttggattcctatcatccttacacct
gaccaggagagcctgcgtgtagtcagtcagagtgacctgtctggaacgctggatggtgtg
ttcctgcagtctccggacattctgctggacgctgcactagtcaagcaatcactacacact
gagcctttctactggagattaccagagcagtttcagggcaataagctgttgtcctatgga
ggaaagctgaggtacactgcagctttttatgcccttgaaggctctggcatctctaacttc
gaccctcagttgcttattaaaggaggacgcacgagtaagctcataatatacagggatgtg
cctgctcctgacaatggagtgaaaaccaaccaagagattgacctgaaggagcgtgaatgg
aagtatttcaactcggtctccgaccaggctgtctcacactctgatttcatgtctgtgctc
ggcaacattcagtacattctcatcaaagcctcctatgggagtgatttacagcagagcaga
atttccaacatctctttagagattgcagtggactcagatgaaatgaatgctggtagagaa
acagcacgtggcatagagagctgtaaatgcccatcaggttatgctggcctttcatgtcag
gagtgtgccccaggattctacaggcagaggctgacagagctcaatgttcgggggtcacgt
ccactgattgagccctgtgtgtcgtgccggtgccacaaccacagccagacttgtgatctg
gacactgggaaatgtcaaggttgtcaagacaacacagcgggtgatcactgcgatctttgt
gcaccaggatactatggaaaagtccgagggtcaattagtgactgctcactctgtgcctgt
ccacagggcaacacaaacagtttcagccccacttgtgttctggagggtgtagatgatttc
cggtgtgatgcctgcatgccaggatatgaaggacagtactgtgaaagatgcactttgggt
tactatgggaacccaaatgagcccggtggtagctgtcagctgtgcaaatgcaatccaact
ggatcggttcacaatctctgtgacaaactctcagggcactgcatgtgcaagccaggagtg
aggggtctcctttgtgacgaatgtgaacccagacacatcctgatgggcactgaatgcatg
tcgtgcaatgataactgcacaggagtactgctgaacgacctggagaacttggagctgtct
atacagtctgttaaccttacaggagttatcctagcaccgtatagcctgctggcttcatta
gagaataccactgatgaaataaagatgcttttatcccctgagaggaattccagcttctta
ttaaagaagggtgaagaacagctgtctgggcttactaaagacactgatcagctgcatcag
aagaccacacaggctaatggcgatgggcaggaccttaataaatctgcagaaaggatggtt
aaccagagtaaagagcttttggattctattaccaaagttcagacagctattcaagctctc
accgaactagggagtaacctgaatgacactcttgacaataatctggagctaaccaacagc
acacaactactggaggaggtctctgcagttctggagaagatgagaaacaaagattttacc
cagcagcatcagagtgtcacatatgagtttaaagctgcccaagcccttctcctgtgggtt
cagagggagtttgagaagccacagaaggatgttaaggagctgaaggagagaatagtcgct
atcctctctgaacacagcagcaagctgcaggatgcccaaaacctggtgaatgagtctttc
accaaggccaacaaaaccaacccccttcttcatgccatgtcaaacaatctggcagctttt
gatgataagaaacagaatgtcagcagcaaccacttcttgacaactgagatgattgaagaa
gcacaagcaatgatgactgagggcttgaatattgcgaccgatgttaatgcaacttctcag
ctagaggggcacaaagatgagctggccctttggaatcctaagctcagaaaacaagtagat
tacattgtgatgcaattgacaaagagaagcgtgctggacctggtgtacaaggcagaggac
catgctgctggactgaagaaactggcagactcacttcacagtgcgctttcaggtgtaagg
aatgtgtcgttcgatgcaacaaatgctgctcaggccaactctaatatcaaagtcagcatt
gaaaaagcagagggtttggcagaacaacttaacaacaccgcagctactgcctggagtttg
gcgctatgtgctgacggctctttgaaaaatgctggagtaaaatctctgcaggaaagctcc
aggcttctatctgaggccactgatctaaacaataagacaaatggtctcatgagtgattta
aaaggactgaaggagcagatgaacaagattcaacacaatgcccaaaataaaagcaaacaa
ctcagtgaaccattgcagctactaagctccattcccagcaatatcactgtgaaagtcttg
gaagcaaaggagcatgctatgggagcgaatgtctcggctgttgcagctctccaaaacctt
gaagatttcagccagaaactagaggaaacctcttcagcagtgaccagagccaatgaaact
gtgaagcgaacaaatgaactgttcagtgattctgcaaagactgctaatgcagcagagaaa
agggtcaaagaagtggaaacgcaaaccaacctgctctttgaacggctgaaaccgctgaaa
atgctgggagataacctgagtaggaacttgtctgagattaaggaactgatagaccaggca
cgaaaacaagcagcttcaattaaagtggcagtggctgctgaacaagactgtgtacgtgcc
tacaaagcagacatctcctccagcaactacaacactctgacgctgatcgtgaaaacatcc
cagcccgacaacctgctcttctacttgggcagcagcaccagtgttgatttcatggctctg
gaaatgcgacgcggaaaagtgtcttttctctgggatgtaggctctggatttgcaaagttg
gagtatcctgacattcagattaacaatgacaagtggcacaggattcatgcaaccaggttt
ggaaagactggttctattactgttcaagaattgaaatcttcacagacctccactgtaaag
acagcaacctcccccggcacatcgactgtgctagatgtgaatcaatccactcttgtcttt
gtggggggtcttggtggtcaaattaagaaatcttcggctgtgaaaatgacccacttcaaa
ggctgtatgggaggggcttcactcaacgggaataatattgggctgtggaattacgcagag
agagaaggcaaatgtaggggctgcttcatgagtccccaggatgaagacacttccttccat
tttgatggcagtgggtattccattgttgaaaaggctcttcgctcgacagtcacacaaata
gtgatgcttttcaaaaccttctctccaaatggattgctgctttaccttgcttctaatgga
acgagagatttcacgtctgtcgagctggtggatggtaaagtcaggctcacctttgagcta
ggatcaggaccgctcagccttatcacagataagacatacaacagtggaaactggtataaa
attgctttccaccgtaccaaacagaaaggttacttggctgtgatggatgcatatattcct
acaaacagagaaaccaaagagggcactacctctggttctgcctcagatctcaatcgttca
gacaaggaccccatttacattggtgggctgcctcgctcaagacccgtcaggaaacaactt
gtgaccagatcttacgtgggctgcatcaaaaatctggagatcgcccgctctaactttgac
ttgctgaaggagtcctatggggtcaagaagggctgcgtattggagccaatccacagtgtg
acagtcttgaatgagggataccttgaacttcaccccatgtctctggcacctgaatcagaa
cttatggcaaccttcgccacaaagaacgacactggcattatcctggctggaatcagcaaa
ggaggaaagcgcagacgaaggcagacacacctgcccttctttgcagttatgcttatcagt
ggccatgtggaagtccacatgaatacaggagagaaaggccacactaaaaaagctgtgata
aaatctcctgctggaagctacagtgatggagaggaccattctgtcatcctgcatcgcagc
gagaggttgttgactgtgcaggtggatgagggaaacctgactgagatgagactttctccg
ttagcagagagcagccctctcaatgtctccagcttctacattggaggtgttccacccggc
gatggcgctgacatgctcaagacgggcaaatccttctacggctgtatcaggaacctgggc
tacaacatggagctcctggacctcaccactgcagtgagctatcataacgtggacatggac
agctgcctgctagaggagagacccaagccagttatccagccggaggagggagacctagag
tctgagctccagccatctcccactccagccaggcctgtctccactatagaacagagctcc
aaaacccaggacccagccaagtgtgtagaagaggagattccagcaatagtccccaatgcc
caacagtttggcctgaccaaaaatagtcacatggttctgtctttagatgagagcacagta
agaagaaagttttccatccagttaaccttccgaacctttgcatcaagtggcctggtttac
ttcatgtcccaccaaaaccaggttgattatgcagctctgcagttgatggaggggcacctg
tattttatctatgacctcggcaagggttcagcgaaagtgacactcccacatgtagttaat
gacggccagtggcacacagtgaaaacagactttgctaagaagaaagctacaatcactgtt
gatgggaaggagtcgtctcctgccggggctgtgggagacaccctggatgtagaagggaaa
ctttacctgggaggtctcccggtggacttcactgccaagaagattggaaatgtgacgcac
agtgttcccgcctgcatcaacaatgtaatgttgaataacaagccactggacagagacaat
cccatctctgtatatgcagtaaacaggtgttacgagacagctcaagagggaacacacttt
gatggaactgggtttgcatctttagcaaaaggctacaaggtcaggtctgacttgattgtc
tcattggagttccgcacgtcactgcagaatggagtcctgctgggaataagcagtgccaag
gtggatgcagtaggactggaacttgtcagtggcaagattttattccatgtgaacaatggg
gcaggaagaataaccactacctacagtccaagtgactccagcagcctctgtgatgggaaa
tggcacaaactccaggctaacaaaagcaagcactggttcagtctaactatcgatgggcaa
acagttcgggcaaacaacccctatccccagtccacatctgctgagaccaacaatccaatc
tatgtgggaggttttcctgccaatgtgaagcagaactgcctatcaatcaagactccattc
cagggctgtatgaggaacctcaggcttgtcaaaggagagcacagcgaggcctacgacttc
agcggagcttttgaacttcgtggggttttccctaactcctgcccaggcgcagagcactaa
DBGET
integrated database retrieval system
