Polyodon spathula (Mississippi paddlefish): 121314550
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Entry
121314550 CDS
T07273
Symbol
nphp3
Name
(RefSeq) nephrocystin-3 isoform X1
KO
K19360
nephrocystin-3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121314550 (nphp3)
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
121314550 (nphp3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3_hel
NPHP3
TPR_10
TPR_1
TPR_7
TPR_8
TPR_MalT
TPR_2
TPR_16
NPHP3_N
NACHT
TPR_11
AAA_16
DUF2225
KAP_NTPase
AAA_22
14-3-3
AAA_14
AAA_19
TPR-S
XRCC4_CC
MIT
DUF4635
Motif
Other DBs
NCBI-GeneID:
121314550
NCBI-ProteinID:
XP_041103875
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All DBs
Position
4:complement(42167388..42265066)
Genome browser
AA seq
1308 aa
AA seq
DB search
MGTASSLVSPGEVIEDAYGGGGGEACEIPVEVKPKARLLRSSFRRGPRVIGASFKSTASV
DLEYAAEYDRLKKDYDIFRVSKNNEIASMQKKEAKLDKENKRLRAELQALQKTYQKILRE
KESALEAKYQAMERAATFEHDRDRVKRQFKIFRETKEKEIQDLLRAKRDLETKLQRLQAQ
GIQVYDPADSDSEDNRTDVTTTGTHCEYWSGGVLGSEPSMGSMMQLQQTFRGPEFAHSLI
DVEGPFANVNRDDWDAAVASLLQVSPLVSQSLWSNTVRCYLMYSSETQAEVDVFVKETHK
LQRFCEGLGHFYLNVCFPEESASCYSTERKEEIERSSVCILFLKSFISRSVLEDCEEAFF
KNPEARLFLIYHRTVDREPPSALAREFIEKVTKADKANKAKVIDHCGDPEEGAYKMFTQL
EKIIKQELFGYENSDFENKDSGIEDDPSSHEEEDFGDVLWDMHDEQEQIEAFQQASKSTC
QLGFEKYIERLNDMVAAPPPIPPLLVSGGPGSGKSLLLSKWIELQQKRSPNTLILYHFVG
RPLSTSSEPVLIIKRLTVKLLQHSWSISALSMDPLKILEEFPRWLEKLSARHQGNIIIII
DSIDQIQQAERHMKWLIDPLPVNVRVIVSVNVETCPQAWRLWPTLHLDPLSPKDVKSVIN
AECLSAEIKLTKEQEKKLERHCRSATTCNALYVTLLAKMITGIKTGWDIDRIIQLCFQCQ
DTVSLYRLVLRAVQETLTAERDKELMKEIVCLVCASHNGVSESELLEMHPDLTSPVLASL
LHKLQSMCMITYGCGIIKFQHLQAWEAVRLEYMDEEQHSTSVYREKLIKYFSQQLSQDRV
TWRGADELPWLFQQQEEKQKLHRSLLNLFVSQNLYKRGHFSELLSYWQFVGKDKSSMAAE
YFDSLKHYEKNCEGEDSMTRLADLYETLGRFLKDLGLLSQAVAPLQRSLEIREAALDPDH
PSVAHSLHQLAGVYVQWKKFGNAEQLYKQALEISDNAFGSDHTRVARELDSLAMLYQKQN
KYEQADKLRKRSLKIRQKSARQKGNMYGFTLLRRRALQLEELTLGNDTADNAKTLNELGV
LYYLQNNLETAKMFLTRSLEMRQRVLGPDHPDCAQSLNNLAAIYNEKKDNEKAEELYESA
LDIRRRALSSDHPSLAYTIKHLAVLYKRRGKLDKAVPLYELAVEIRQKSFGPQHPSVATA
LVNLAVLYCQVKKHKEALPLYERALKVYEDSLGRSHPRVGETLKNLAVLSYEEGDFEKAA
ELYKRAMEIKEAEPSLVCGKAPSRHSSGDTISLRNAPHPNVHVDVGQR
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgggcacagcctcctccctggtgagccccggggaagtcattgaggatgcgtatggtggc
gggggtggggaagcctgtgagattcctgtggaggtgaagcccaaagcccggctccttcgc
agctcgttccgccgtggcccacgggtcattggtgccagcttcaaatctacagcttctgtg
gatcttgaatatgctgccgagtatgataggctgaaaaaagattatgatatctttcgggtc
agcaagaacaacgaaattgcctcaatgcagaaaaaggaagccaagctggacaaggaaaac
aaaagactgagagcagaacttcaggctctgcagaaaacataccagaagatactacgagag
aaagagagtgcattagaagctaaataccaggcaatggaaagggctgctacctttgagcat
gacagagacagagtaaagcgtcagtttaaaatctttagagaaacaaaggagaaggagatc
caggacttgctgagagccaaacgggatctagagaccaagctgcaaagacttcaggctcag
ggaatccaagtgtacgacccagctgactcagattcagaagacaaccggactgatgtgacc
accacaggcacacactgtgaatactggagtggtggtgttctggggagtgagccctctatg
ggcagcatgatgcaacttcagcagacctttagaggacctgagtttgcacacagcttgatt
gatgtggaaggtccttttgctaatgtaaacagagatgactgggatgcagctgtcgccagt
ctgctgcaagtctccccgctggtttcccagtccctttggagtaatacagtgcgttgttac
cttatgtactcatctgaaacgcaagctgaggtggatgtgtttgtgaaggaaactcacaaa
ctgcaaaggttttgtgagggactggggcacttttatctaaatgtctgctttcctgaagag
agtgccagctgctactctacagaacggaaggaggaaatcgagagaagctctgtctgcatt
ttatttctaaagtcttttatttctcgctcggtattggaagactgtgaagaagccttcttt
aaaaatccagaagcaaggctgttcctgatttaccacaggactgtggatcgagagccccct
tcagcgctggcaagagaatttattgaaaaggtcacaaaggcagataaagcaaacaaggca
aaagtaatagatcactgcggggatccagaggagggagcatataaaatgtttacacagctg
gagaaaatcattaaacaggaattgtttggatatgagaattcagactttgagaacaaggat
tctgggattgaggatgaccccagcagtcatgaggaggaggactttggagatgtcctgtgg
gatatgcacgatgagcaggagcaaatagaagcttttcagcaagcatcaaagtctacctgt
cagctaggattcgaaaagtacattgaacgactgaatgacatggtggctgctccaccaccc
atccctcctctgcttgtgtcagggggaccaggctctggcaaatctcttcttttatcaaaa
tggattgaacttcagcagaagcgctcgccaaacacgctgatcctgtatcattttgttgga
agacccttgtctaccagttcagagcctgtattgattattaaacggcttactgtaaaactt
cttcagcattcctggtcaatatctgccttgtcaatggacccccttaagatactagaggaa
tttccacgatggttggagaaactgtcagcccgtcaccaaggcaacatcattatcattata
gattccattgaccagatacagcaagctgaaagacacatgaagtggctaattgatccactg
cctgtcaatgtcagggtgattgtttctgtaaatgtggagacctgcccacaggcttggagg
ttatggccaacactccaccttgatccacttagcccaaaggatgtgaagtctgttatcaat
gctgaatgcctaagtgccgaaatcaaactaaccaaagagcaggaaaagaaactggaaaga
cattgtcgatctgcaacaacgtgcaatgccttgtatgtgactctgctggccaaaatgatt
actggcatcaaaacaggatgggatattgatagaattatccagctgtgtttccagtgccaa
gacacagtctctctctacaggctggtactgagagctgtgcaggagaccttgactgcagag
agggacaaggaactgatgaaagagattgtttgtctggtctgtgcaagccacaatggtgtg
agtgaatccgagcttttggagatgcatcctgacctgacctcgccagtgctggcttccctt
ctgcacaaactgcaaagtatgtgcatgataacatatggctgtggaattatcaagtttcag
catctacaggcttgggaagctgtgagacttgagtacatggatgaagaacagcattctact
tcagtatacagagagaagttaataaagtactttagccagcagttaagccaagaccgggtg
acttggaggggtgcagatgaactcccctggctgttccagcaacaggaagagaaacagaaa
ctgcacaggagtctgcttaacctgtttgtttcacagaatctttataaaaggggtcatttt
tcagaactactgagttactggcagtttgtcgggaaagataaaagttccatggcagctgag
tattttgactctctaaagcactatgaaaagaactgtgagggagaagacagcatgacacgc
ttggctgatttgtatgaaactctaggacgattcctgaaggacctaggtctcctcagtcag
gctgtggcccccctgcagcgttcactggagattcgagaggccgcactagatccagaccac
cccagtgtggctcattctttgcaccagctggctggggtttatgtgcagtggaaaaagttt
ggaaatgcagagcagctgtacaagcaagctctggaaatcagtgataatgcatttgggtca
gatcacaccagagtggctcgtgaactggattcactcgcaatgctttaccagaaacagaac
aagtatgaacaagctgacaaattgagaaaaaggtccttaaagataagacagaagtcggca
cgtcagaagggaaacatgtatggtttcactctcctgcggcgccgtgccctgcaactggag
gagctcacattgggcaatgacactgctgacaatgccaaaacactcaatgagcttggagtt
ctctactacttgcagaacaaccttgaaactgccaaaatgtttctgacccggtccctggag
atgaggcagcgagtgcttgggccggatcacccggactgcgcccagtctctgaataacctg
gctgctatttacaatgagaagaaagacaatgagaaggcagaggagctgtacgagagtgcc
ctggacatcaggaggagagcgctctcgtctgatcacccctccctggcgtacaccatcaaa
caccttgcagtgctgtacaagaggagggggaaactggacaaggctgttccactgtatgaa
ctggcagttgaaattcggcagaagtcttttgggcctcaacacccaagtgtggccacagct
ttagtaaacctggctgtactatactgtcaggtgaaaaaacataaagaagctctgcccctg
tatgagcgagctctgaaggtctatgaggacagcctgggtcgcagtcatcccagagtggga
gagacgctcaagaatctagctgtgttgagttacgaagagggcgattttgaaaaagctgct
gaactgtacaaaagagccatggaaattaaagaagcagagccgtcgctggtttgtggaaaa
gctccttccagacactcaagtggagacaccatcagcctaagaaatgctccccaccccaat
gtgcatgtagatgttggtcaaaggtga
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