Polyodon spathula (Mississippi paddlefish): 121314662
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Entry
121314662 CDS
T07273
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121314662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121314662
03036 Chromosome and associated proteins [BR:
pspa03036
]
121314662
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121314662
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121314662
PBAF complex
121314662
GBAF(ncBAF) complex
121314662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
121314662
NCBI-ProteinID:
XP_041104069
LinkDB
All DBs
Position
4:57803284..57845371
Genome browser
AA seq
1087 aa
AA seq
DB search
MAMAATAAGGTGSGGTAVTVQGGSGASALGVGRKKDGGPPVKYWESAETISQLESVRVWT
GKHYKKYIQADSPTNKTLAGLVVQLLQFQEDAFGKRINNPALTKLPAKTFLDFKAGGALC
HILGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFMTVEKTLVQNNCLTRPSVYLVPEIEQK
LATKLKDIIKRHQGTVTDDKSKASHHIYPVPSSLEDEEWLRPVMRKDKQVLVHWGMYPDS
YDTWVPASDVDGDIEENVNPDKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKSVSYPKR
ISTHIQESSRTPDRKERKAAASGKKRRRSPSPPPTPAESRKKGGKKGQPTPNWKRRNQRE
EEEEHEEEEEQEDLTKDMEDPIPVPNMEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDD
EPTVTSGKEEEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYASWFDYNCIHEIERRALPE
FFNGKNKSKTPEIFLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRAHAFLEQWG
LINYQVDADSRPLPMGPPPTPHFNVLADTPSGLVPLQHRPPQVPASQQMLNFPEKGKDKP
SDMQNFGLRTDIYSKKTLNKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRT
QDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAA
AAKAALEEFSRVREEVPAELVEAHVKKVQEAAKSTGKVDPAFGLESSGIAGTTPEEPEKL
DALESEKMETETEGQQLEKMENKEDAAAEKPSEPAEKPQERVKSEATESEKEEEALAGEE
SRTDKDQEEEKENMDTSRDSDWESGKKVEPEVGEGNIATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQAFHMEQLKY
AEMKARQQMEQQQAAAAAQNPAGQHPALPGMMGHQQPPSFPVMHHQIGPHHPGQQGPMGP
GQPMAGRILTSAPGGPSHPAQPSNPMMMGPRHPGAQNGMYPTPPVQPEGLAPTSAGPPTA
STRVAEN
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcggctactgcagcgggaggaaccggctcaggcggcaccgcagttaccgtg
caagggggtagtggcgcctcagcactcggcgtaggcaggaaaaaagatggggggccgcct
gtgaagtactgggagagcgcggagacgatttcccaacttgagtcggtgcgggtttggacc
gggaagcattacaaaaagtacattcaggctgactcccccaccaataaaacgcttgcaggt
ctggtggtgcaactgctgcagttccaagaagatgcctttgggaaacgtatcaacaacccg
gcgctcaccaaactgccggcaaagaccttcctggacttcaaggcaggaggtgccttgtgt
cacatcctggggtcagtctacaaattcaagagtgagcagggctggcgaaggtttgatttg
cagaacccgtcccggatggacagaaatgttgagatgttcatgactgttgagaaaacactg
gtacagaacaactgtctgaccaggccttctgtctaccttgtccctgaaattgagcagaag
ctggcaactaaactaaaggacatcattaagcggcaccagggtactgttacagatgacaag
tccaaggcttctcaccacatctatcctgtcccttcctcactggaggatgaggagtggctg
cgtccggtgatgcggaaggacaaacaagtgctggtacactgggggatgtatccggacagt
tatgatacctgggttcctgccagtgatgttgatggtgatattgaagaaaacgtgaaccct
gataaaccctggaaggttcatgcaaagtgggtcctggacacagacgcctttaatgaatgg
atgaacgaggaagattatgaagtagatgagaacaagaagtctgtgagttatcccaaacgc
atctccacccacattcaggagtcctcccgcacccctgatcgaaaggaacggaaagcagct
gcttctgggaaaaagaggagacgctccccctctccccctcccacccctgcagagtcccga
aagaagggtggaaagaagggccaacccaccccaaactggaagagacgcaatcagcgtgag
gaggaggaggaacatgaagaggaggaggaacaggaagacctgaccaaggacatggaggac
cccatccctgtccccaacatggaggaggtcgtcctgcccaagaatgtgaatcccaaaaag
gacagtgagaataccccagtgaaggggggcaccgtggctgatctggatgagcaagatgat
gagcccacggttaccagcgggaaggaggaggaggagcagggaaaggcagaggtgaaccgc
ttgatcgactccagtgaagacaatgtgacagagcagacccaccacatcatcatccccagc
tatgcgtcctggtttgactacaactgtatccatgagattgagaggcgtgccctgccagag
tttttcaatgggaagaataaatccaaaaccccagagatattcctggcatatcgtaacttc
atgatcgacacttaccggttgaacccacaagagtacctcaccagcacctcctgcaggagg
aacctcaccggggatgtgtgtgctgtcatgagggcacacgccttcctggagcagtggggt
ctgatcaattaccaagtggacgctgacagccgtcctctgccaatggggcccccgcccaca
ccccacttcaatgtgctggcagacaccccgtctggactggtacccctgcaacaccgcccc
ccccaggtcccggcctcccagcagatgttgaacttcccagagaagggcaaggacaagccc
tcagacatgcagaattttgggctccgcactgacatttactccaagaaaacactcaacaag
agcaaaggagccagtgcagggagggagtggaccgaacaggagaccctgctcttactagag
gctctggagatgtacaaggacgactggaacaaggtgtctgagcacgtcggaagccgcacc
caggacgaatgtatcctgcacttcctgcggctgcccattgaggatccctacctggagaac
tcggacgcttccttggggccactggcctatcagcccgtccccttcagccagtccggtaac
cctgtcatgagcactgtggctttcctggcctccgtagtggacccccgcgtggcagctgct
gctgcaaaggcagctctagaggagttctcgcgggtgcgtgaggaggttccagcagagctg
gtggaggctcacgtcaagaaggtccaggaagcagccaagagcactggcaaagttgaccca
gcctttgggctggagagcagcggcatagccggcaccacccccgaggagccagagaagcta
gatgccctagagtctgagaagatggagacagagactgaaggacagcagctagagaagatg
gagaacaaggaggatgcagcagcagagaagcccagcgagcctgcagagaagccacaggag
cgcgtgaagagcgaggccacagagtcggagaaggaggaggaagcactggctggagaggag
agcaggacagataaagaccaggaggaggaaaaggagaacatggacaccagtagggacagt
gattgggagtctgggaagaaggtggagcccgaggtgggggaggggaacattgccactgcc
gcagcagcagctctggcctccgcagcaactaaagccaagcacctggctgcagtggaggag
aggaagatcaagtcccttgtggccctgttggtcgagacccagatgaagaagctggagatc
aagctgagacactttgaggagctggagaccattatggaccgtgagaaggaagcgctggag
cagcagaggcaacagttgctgacagagagacaggccttccacatggagcagcttaagtat
gcagagatgaaagctcgccagcagatggagcagcagcaggcagcagcggccgcccagaac
ccagctgggcagcaccctgctttaccaggcatgatggggcaccagcagcccccctccttc
cctgtgatgcatcaccagataggaccccaccaccctggacagcaagggcctatgggacca
ggccagcccatggcagggagaatattgaccagtgctccaggtggaccgtcccaccctgcg
cagcccagcaatcccatgatgatgggaccccggcacccaggagcacagaatggcatgtac
cccaccccaccagtgcagcctgaagggttagccccaacctctgcaggtcctccgaccgcc
tcaaccagagtggctgagaactag
DBGET
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