Polyodon spathula (Mississippi paddlefish): 121314712
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Entry
121314712 CDS
T07273
Name
(RefSeq) programmed cell death 6-interacting protein-like isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03250
Viral life cycle - HIV-1
pspa03272
Virion - Hepatitis viruses
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121314712
03272 Virion - Hepatitis viruses
121314712
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121314712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121314712
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121314712
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
121314712
Exosome [BR:
pspa04147
]
Exosomal proteins
Proteins found in most exosomes
121314712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2205
HbrB
Motif
Other DBs
NCBI-GeneID:
121314712
NCBI-ProteinID:
XP_041104210
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All DBs
Position
4:complement(62430076..62461370)
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AA seq
876 aa
AA seq
DB search
MATFISVPLKKSSEVDLVKPLTKFICATYTAAEDQGEYVRAAEELNKLRKSAVGRPLDKH
ESSLEVLLRYYDQLCAIEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEKS
CVLFNIGALASQIAYEQNLDNDEGLKTAAKYYQLASGAFSNIKDTVLSALNREPTMDISP
DTVGTLSQIMLAQAQEVFFLKATSDKMKDAIIARLANQAADFYGDAFKQCQYKENLPKYF
YFQEVLPVLAAKHCIMQANAEYHQSLLAKQQKKFGEEVGRLQHATELVKTVASRYDEYVN
VKDLSDKIARALTAAKKDNDFIYHDRVPDLKDLEAIGKAALVKSTVIKVPISQKFTDLFE
KMVPLAVQHSMSVYNSRKAEIVNRLIGQMREATNLSNGVLASLNLPAAIEDLSGDSIPQS
ILEKSRAIIQQGGLQSIDQLIKDLPELLQRNREILDESVRILDEEETTDNELRNKFGQRW
QRTASNDLYKPLRTEGENLRKFLDQAVQADKVVKERYSNHRDMIALLCKPEAELTAAIPS
ANPAKTLQGSEVVSVLRALLANVNEVKMEREKLENDIKSAQCDMTSKFLTALAQDGTINE
EAISVTELDNIYGGYTQKVQQSLKSQEEILGNIQNSHQEFSTMKQSNADANQREEMLKKL
AAAHDSYVELSNNLKEGTKFYNELTEILLKFQNKCSDIVFARKTERDELLKDLQQSIARQ
PSAPSLPAVPAYQSTPSSTTTPATATSSVPTPAPRTVFQSKPQPPARPPPPAIQAQAANT
SIPPASGAGPIPPATQPVSTPGATPSPAQGPPYPTYQGYPGCYQMPVAYNPYAYGQFNMP
YIYQAPGQAPYPNVHPPQQPQQPGYPYPQQHYYPQQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttttatttcagttccactaaagaagtcctccgaggtggacttggtgaaacct
ctgaccaaattcatctgcgctacctacacagcggcggaggaccagggggagtacgtccga
gcggcggaagaactgaacaagctgcggaaaagtgcggtggggaggccgcttgacaagcac
gaaagctctttggaggttctgttgaggtactatgatcagctgtgtgccattgaacccaag
tttccattctctgaaaatcagttgtgtttaacgtttacctggaaggatgcgtttgataaa
ggatcactttttggaggctcagtcaagcttgccctggctagtctgggatatgagaagagc
tgtgttttattcaatattggtgccctggccagccagatcgcctatgaacaaaacttagat
aacgatgaaggactgaagacagctgctaaatattatcagctggccagtggggctttctcc
aacattaaagacacagtgttgtctgctttgaaccgagagcccaccatggacatctctcca
gacacggtcgggaccctcagtcagatcatgctggctcaggcacaggaggtgtttttcctg
aaagccacatcagacaaaatgaaggatgccattatagctagacttgctaaccaagctgca
gatttttatggtgatgccttcaaacagtgtcagtacaaggagaatttaccaaagtatttt
tattttcaggaagtgctgcctgtccttgctgcaaagcactgcatcatgcaggccaatgca
gagtaccaccagtccctcctggccaagcagcagaagaaatttggggaggaggttggaagg
ttacagcatgcgacagagctggtaaaaacagtggcatctcgctatgatgagtatgtcaac
gtgaaagatctctccgataaaattgcccgtgccctaactgctgcaaagaaagacaatgac
ttcatctatcatgaccgggttccagatctcaaagacctggaggccattggcaaagctgcc
ttggtaaagtctacagtaatcaaagtgcccattagccagaagttcactgacctgtttgag
aagatggtccctttggcagtgcagcattccatgagcgtttacaactcaagaaaggctgaa
atagtaaataggcttatcgggcaaatgagagaagcaacaaacctgtctaatggagtccta
gcctctctgaacttgcctgctgctattgaggatctctctggagacagcatcccccagtct
atcttggagaagtccagagctattatccagcagggaggcctgcagagcattgaccagctg
ataaaagaccttcctgaacttctgcagagaaaccgagagatcctagatgagtctgtgaga
atactggatgaggaagaaaccacagataacgaactcaggaacaaattcggtcaacgctgg
caaagaactgcatcgaatgacctttacaagcccctaagaacagagggagaaaatttacgc
aaatttttggaccaagctgtccaggcggataaagttgtcaaagaacgctacagcaatcac
agggacatgattgccttgctttgcaaacccgaggcagagcttactgctgcaattccttca
gccaatcctgcaaaaaccttgcaaggcagcgaggttgtgtcagtgctcagagcactgttg
gctaatgttaatgaagtaaagatggagagagagaagctggagaatgacatcaaatcagcc
cagtgtgacatgaccagcaaattcctgacagcacttgctcaagacggcaccattaatgag
gaggcaatctctgtgacagagcttgacaacatctacggaggatacacccagaaagtgcag
cagagcttgaagagccaagaagagattctgggaaatatccagaactctcatcaggaattc
tctacaatgaaacaatcaaacgcagatgctaaccagagagaggagatgctcaagaaactt
gcggctgctcacgatagctatgtggaactctccaacaatctgaaagaaggcaccaagttc
tacaatgaacttactgaaatccttttgaaattccaaaacaagtgcagcgacattgtgttt
gcacgcaaaactgaacgggatgaacttctcaaggatttacagcagagcattgctcgacag
cccagtgctccctcgcttcctgcagtgcctgcgtaccagtccacccccagcagtaccaca
acaccagccactgctacttccagtgttcccacacctgcaccaagaactgtgtttcagagc
aaaccccagccaccagcacgcccgcctccccctgcaattcaagcccaagcggccaacacc
agcattccaccagccagcggggcagggccgattccccctgctacccagccagtgtcgacc
cctggagccactccatcccctgcacaggggcctccctacccaacataccaaggataccct
gggtgttatcagatgcccgtggcctacaacccatatgcttatggccaattcaacatgcca
tatatttaccaggctccaggacaagcaccttatcctaatgtacatccaccccagcaaccc
cagcaacccggatacccatacccacagcagcattattatccccagcagtag
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integrated database retrieval system
