Polyodon spathula (Mississippi paddlefish): 121314748
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Entry
121314748 CDS
T07273
Name
(RefSeq) LIM domain-containing protein 1-like isoform X1
KO
K16682
LIM domain-containing protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121314748
03036 Chromosome and associated proteins [BR:
pspa03036
]
121314748
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121314748
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
121314748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
121314748
NCBI-ProteinID:
XP_041104318
LinkDB
All DBs
Position
4:64765049..64789074
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AA seq
732 aa
AA seq
DB search
MDKYDDIGLEASKFIEDLNMYEASRDGLFRTRREAGNNADFEETRKVFASKMTKIHLQKQ
QEEMANNNLGPAVAASGRVNRGVVGGHNMLSRASDNAVLYTNRPPINSNIRLAGEAAAKP
PILSGPMSGNANANQHLYDLQKLNRYPQQEVSVSRGPINGNSYEIKKVGEHPLKLQTGPG
SSWGGSHNRFPSQDDLAAASPVFTDPNPQYQQQQYRATASFEQKPLGQRSASFSNTLSPL
LPSFTAPSFNQTQGLPHQRSLSFSTPSSTASSQSYPIQTDGPAQPSWTRTTAPDMRNTGS
PETEPPAPDSPVKPNTDYNYHYCQQQKPHQPSQQPANTRSSPGVAYSVPGDSRRPGGELY
DFKQNGQQLQGPRSPTFPYRVIPTSPNCQVSSNNPSVRSEQVPPATTGNGGGFGDASSLP
LFTQSSSRSYTQGQAPSSQLATAVPVSSAFDNPPSQPPSHSQQGSSCDISTQETSSPPRV
VKLPCPTLLIQPEQGPSAAEIKLEALTKRLEQEMDAQPKADYFGTCVKCNKGVYGAKQAC
QAMGNLYHDVCFTCSACNRRLRGRAFYYVCGKVFCEEDFLYSGFQQSADKCNVCGHLIMD
MILQALGKSYHPGCFRCVICNEGLDGVPFTVDTENKIYCVRDYHKSRVLAPKCAACGQPI
LPSEGSDETIRVVSMDRNYHVECYHCEDCKMELNDEEGHRCFPLNGHLLCHSCHLKHIDS
ETPPSSVYQHQF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatatagggctggaggctagtaaatttattgaggatctcaatatg
tatgaagcatccagagatggactgttcagaacaagaagagaggcgggcaacaatgctgac
tttgaagaaaccagaaaagtttttgcctccaaaatgaccaaaatccatttgcaaaaacag
caagaggaaatggcaaacaataatctaggcccagccgtagccgcatctggaagggttaac
agaggggttgttggtggtcacaacatgctgagcagagcttcagacaacgcggtattatat
accaacaggccacctatcaatagtaacatcagactggctggtgaagccgctgccaaaccg
ccaatattgtcaggacccatgtctggtaatgccaacgcaaaccagcacctttatgatctg
cagaaactgaacagatacccacagcaagaggtctcagtcagcaggggtcccatcaatgga
aacagttatgagatcaagaaggttggggaacatcctttgaagctacaaacaggcccaggg
tccagctggggtgggtcacacaatcggtttcccagccaagatgacctggcagctgcaagc
cctgtctttactgacccgaacccacagtaccaacagcagcaatacagagccactgcatcc
tttgagcagaagccacttggtcagaggtctgcttcattttccaatactctctccccattg
ctgccatcattcactgctccatcttttaaccaaacacagggactgcctcaccagagatct
ctatctttctctaccccctcctccactgcatcttcccagagctatcctatccaaacagat
ggacccgcccaaccaagctggacaaggaccacagctccggacatgagaaatacaggtagc
ccagaaactgagcctccagccccagacagtcctgttaaacccaacacggactacaactac
cactattgtcagcagcagaaaccacaccaacccagccagcaacctgccaatacaaggtcc
agtcctggagtagcttattctgttccaggtgactccagaagacctggaggtgagctttat
gacttcaaacaaaatgggcagcagctccagggtccaagatcccccacttttccatatcga
gtaatccctaccagcccaaactgccaggtttcctccaacaacccctcagtgcgctccgaa
caagttccccctgccaccaccggcaatggaggtggctttggcgatgcaagcagtctgcca
cttttcacacaatccagctccagaagctatacccagggtcaggctccgagcagccagctg
gccactgctgtcccggtcagctcagcttttgacaatcctccttcgcagccaccaagccat
tcccagcagggatcttcctgtgacatctccactcaggaaacctccagcccccccagggtg
gtcaaactgccctgtccaactctccttatacagccggagcaggggccgtctgctgccgaa
ataaaattagaagctcttacgaagcgcttggaacaagagatggatgcccagccaaaggcg
gattactttgggacctgtgtgaagtgtaacaaaggagtctatggagcgaagcaggcgtgc
caggccatggggaatctgtaccacgacgtttgcttcacctgcagtgcctgcaacaggcga
ctccggggccgagctttctattatgtgtgtgggaaggtgttctgtgaggaggacttcctg
tactctggtttccagcagtcagcggacaaatgtaatgtttgtgggcacttgataatggac
atgatccttcaggccctggggaaatcctatcacccgggttgtttccgctgtgtgatctgt
aacgaggggctggatggtgtgcctttcactgtggacaccgagaacaagatctactgtgtc
cgggattaccacaaatcaagagtccttgcaccaaaatgtgcagcctgtggccagccaatc
ctgccctcggagggctctgacgaaactatccgtgttgtgtccatggatagaaactatcac
gtggagtgttaccactgtgaggactgtaagatggagctgaacgacgaggaaggacaccgc
tgcttccctctgaatgggcatctgctttgccactcctgtcacctcaagcacatcgacagc
gagacaccgccttcctcagtttaccagcatcagttctag
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