Polyodon spathula (Mississippi paddlefish): 121314819
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Entry
121314819 CDS
T07273
Symbol
nup153
Name
(RefSeq) nuclear pore complex protein Nup153
KO
K14296
nuclear pore complex protein Nup153
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121314819 (nup153)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121314819 (nup153)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121314819 (nup153)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121314819 (nup153)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
TackOD1
HTH_IclR
Motif
Other DBs
NCBI-GeneID:
121314819
NCBI-ProteinID:
XP_041104454
LinkDB
All DBs
Position
4:72172584..72219154
Genome browser
AA seq
1431 aa
AA seq
DB search
MADAGGGKIRTRRYHIASKPYIKGKQQQGIIGRVTDTVKNIVPGWLQKYFKNDEPAGAEE
EEVGEAADGQENHDGQIQNNQGHTDEEVLPFSDRTRSPEPSTSNAEPSTSQSSLNFSILP
RPPLNRSHLNFSALNSPALHCQPSTSAAFPIGSSGFSLIKEVKDSTSQHEDDNISTTSGF
SSRASDKDVTTSKNMCVLPMWSPEADRSQSVPQKAGNGLRKPAFNLSVFGGSSTSLASSS
ALNSSQLGDSLFYPGKTTYGGAAAVRSPSSRVRGTPYQAPVRRQITAKQIHSPCGVTSAT
ARRILQSLERMSSPLADAKRIPSQSSSPLSPMLNRSGLEVTNFQSKRKSDAQQPPVQKLV
TPKAASVAVNRSMFFKPTLTPTGHSSRSADRGGRQTKQVPEISLQHPKSTSSFSYPSFST
PTANGMAGGAGGKMKRERGIRASSKPAQDQEQAEVLNLPHISLPMRMSTLPTLNFSSPAN
ASPSVMMTPVANKVPPASSVQNRTDFTFSSPIFKATEMSPLSLTPSAGFTFSAPVSKTVA
SDPSGTTSAPSAMPVQNSSTSSSAVGTPVNTNDEDFDGPFRPAKTLKQGSVLDILKGPDF
SSSPPARSTPVPVKPFQMSSISSPTGGLGFGDKFKPATGSWQCDACLLQNKPTDSKCVAC
QTAKPNIDSSKQSNCSKMTSETLQSLGDKFKPVSGTWECDTCLVQNKPEVTKCVACETSK
PGTGVKSALTLPAFSECKLTMGSGGSTSTTTTTSSLSSGFGFGEKFRKPEGAWDCDVCLV
QNKAEDIKCVSCQCAKPGAVAVPATALTVPESSGGLLGFGDKFKRPEGSWDCDVCAVQNK
AEVTQCVACQSAKPGAKVETKGFSSSALSATTVSPFGFGIQSASMDSSATLSTGGFTFGD
QGGIKFGTLTDNASSGGIKFGMAKSEDSRKADSQTIGSGFKFGAGGGIQFGTGNSSSQSE
NKAADQKGKSSLEGFSFGLSAPPKADEKTADGGFKFGAPKEKPELGGIAAAVPFSFGKQE
EKKLFGEQLPAVGFAFRKSVEEETGALTPAAAVASTFMLGKTDQPDPVSSSSSLMFAKEK
ETDKPAPQLGFSFCKPDPSKEEAKPAFSFGKPAEKQEAAVQPKPAFAFGAAPATADQEAS
KPEFNFMASVSATATVTAASAASSTPATSMFGSSSTSAPIAPVSTFIFGQASSTGFSSGA
SETTTSSKGFMFGVQESKAPAAGASPFMFVTGSNTAATAAFGFGSAAPTTTSSTGSSAAP
FVFGSASSTPASAPAFGTNQTPAFGQGSNQSSAPAFGSPAAALFCAGSQPPAFGSQASTS
QPSVFGQQSNQPPAFGAAVAASAAPAGGFQFGSTSNFGTPNSSGFFAFGGSAGASPAPAA
PAQPSASTGGSQFPQTAGFNIGSTKTTSTGSSQGQHQISGRKIKTAIRRRK
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgggaggagggaaaattagaaccaggaggtatcatatcgcttccaaaccc
tacatcaaaggcaaacagcagcaaggcattattggcagagtgaccgacacagtgaagaat
atagttcctggctggttacagaaatacttcaagaatgatgagccagcaggagcagaggaa
gaggaggttggggaagcagcagatggacaggagaatcatgacggccagattcaaaacaac
cagggtcacacagacgaggaggtgctgcctttttccgatagaacgcgctcccctgaacca
tcaaccagtaatgcagagccatctacaagccagtcttcattgaatttcagtatcctgcca
agaccaccgctcaatcgaagtcatcttaacttctccgcactgaattcccctgcgcttcac
tgtcaaccttctacgtctgcagcatttcccattggcagttcaggcttttccctgataaag
gaagtcaaagactctacctctcagcacgaagatgacaacatctcaaccaccagcggcttc
tcctctagagcatctgataaagatgtgaccacttcaaaaaatatgtgtgtgctgcctatg
tggtctcctgaagctgaccgttctcagtcggtcccacaaaaagctggaaacggcttgaga
aagccggcttttaacctgtctgtctttggtggatcatccacatcccttgcaagcagctct
gcgctgaattctagccagcttggagactcactgttttatcctggcaaaacaacatacgga
ggggcagctgcagtgaggtccccaagttcgagagttcggggtacaccttaccaggcacct
gtaagaagacagataaccgcaaaacagattcactctccatgtggggtgacaagtgccaca
gcacggagaattctccagtctttagaacggatgtccagtcctttagcagatgctaaaaga
atcccatcacagtcttcatcaccgttgtctccaatgctgaataggagtggattagaagtc
acaaatttccagtccaaaagaaagagtgatgcacaacaacctcctgtccagaagctcgtg
acaccaaaggctgcttctgtggcagtgaacagatctatgtttttcaaacctactttaaca
ccgactggtcattcgagtaggtcagctgacaggggtggaagacaaacaaagcaggtacca
gaaatatcgctgcagcacccgaaaagcacaagcagtttttcatacccatcgttcagcact
cctacagccaatggaatggctggtggagcaggtgggaagatgaagagggagaggggcatc
cgtgcctcctcgaaacctgcacaggaccaagagcaagcagaggttctgaatctgccacat
atttccttgcctatgaggatgtcgactttgccaaccttgaacttttcctctcctgcaaat
gcatccccctctgtgatgatgactccagtagctaacaaggtaccgcctgccagctctgtt
cagaaccgcacagatttcaccttctcatcaccaatttttaaagcaaccgagatgagtcca
ctatctcttacgccctctgctggatttacatttagcgcaccggtttctaaaacagtagca
tctgacccgagtggaacaacatcagcgccttcagctatgccagttcagaactcctccaca
tcttcatctgctgttggcactccggtgaatacaaatgatgaggactttgatggtcccttc
agacctgcaaaaactttaaaacagggcagtgtgcttgatattttaaaaggacctgatttt
tcttcatctcctcctgctagaagcacaccagtcccggtgaagcctttccagatgagttcc
ataagctcaccaactggggggcttggatttggggacaagtttaaacctgcaacaggctcc
tggcagtgtgatgcttgtctcttgcagaacaaaccgactgacagcaaatgtgttgcatgt
cagactgctaaaccaaacatagattcctcaaaacagagcaattgcagcaaaatgacatca
gagaccttgcagagccttggggataaattcaaacctgtgtctgggacctgggaatgtgac
acttgtttagtacagaacaaaccggaagttacaaaatgtgtggcctgtgagacttcaaag
cctgggactggagtaaaatctgccttgactttgcctgccttttcggaatgtaagttgaca
atgggttctggtggctccacctccaccacaacaacgacatcttcgctgtcttctgggttc
ggatttggggaaaagttcagaaagccagagggagcctgggattgcgatgtgtgccttgta
cagaataaagcagaggacattaagtgcgtctcctgtcagtgtgcaaaaccaggtgcggtt
gcagtacctgctactgccctgactgtcccagaatcatctggagggctgctaggctttggg
gacaagtttaagagacctgaaggaagctgggactgtgatgtgtgtgcagtgcaaaataaa
gctgaagtgacgcaatgtgtggcatgtcaaagtgcaaagccaggagccaaggtggagacc
aaaggttttagctcttcggctttatcagctaccactgtatccccatttggttttgggatt
cagtctgcgtccatggactcttcagcaactctgagtacggggggatttacatttggagac
cagggtgggataaaatttggcactttgacagacaatgcatcttctggtgggattaagttt
ggtatggcaaagagcgaggacagtagaaaggcagattcgcagaccatcggtagcggattt
aaatttggtgctggaggaggaattcagttcggcactggaaacagcagcagtcagtcggaa
aacaaagctgccgatcaaaaaggcaagtcgtctttggaaggtttttcttttggactctcc
gcccctcctaaagcagatgagaaaacagcagatgggggatttaagtttggggcccccaag
gagaaaccagaactgggaggaattgctgcagctgtgccattttcttttggtaaacaagag
gaaaaaaagctttttggggagcagctgccagcagttgggtttgcttttaggaaatctgtg
gaggaagagactggcgctctgacccctgctgcagctgtggcctcaacgttcatgcttggg
aagactgatcagccagaccctgtcagcagctcctccagcttaatgttcgctaaggagaag
gagacagacaagcctgcaccacagctgggcttctctttctgcaagcctgacccgtccaag
gaggaggcaaaacctgcgttcagctttgggaaacctgctgaaaagcaagaggcagcagtg
caaccaaaaccagcatttgcatttggggctgcccctgctactgcagatcaagaagcttcc
aagcctgaatttaacttcatggcaagcgtgtcggccactgctacagttactgctgcctcc
gcggcctccagcaccccggccaccagcatgtttgggagctccagcacctctgcacccatc
gcaccggtctctaccttcatattcggtcaggccagtagcactggcttttcaagtggggct
tctgagactaccacctcctccaaaggcttcatgtttggtgtgcaggaaagcaaagcacct
gctgctggagcctcacccttcatgtttgtgacgggaagtaacactgcagccacagcagct
tttggttttgggtcagctgcacctacaaccaccagttctacaggctcttctgctgctcca
tttgtatttggttcggcctcttcaacaccagccagtgcccctgcttttggcaccaaccag
acccctgcatttggccagggatccaaccagtccagtgctccagccttcggctcccctgct
gctgctctcttctgtgctggatcccagccacctgcctttgggtcccaggccagcaccagc
cagccatccgtgtttggacagcagagtaatcagccgcctgcctttggcgctgcagtagct
gcttccgctgccccagctggagggttccaatttgggtcaactagtaactttgggactccc
aacagcagtgggttctttgctttcggtggaagtgctggagcatctccagccccggcagca
cccgcccagccctcagcctccacaggaggctcccagttcccccagactgcaggttttaac
attggttctacaaagactactagtactggatcttcccaaggacaacaccaaatttctggc
cggaagataaagactgcaattcgacgcaggaagtag
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