Polyodon spathula (Mississippi paddlefish): 121314884
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Entry
121314884 CDS
T07273
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121314884
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Others
121314884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
DUF4959
Motif
Other DBs
NCBI-GeneID:
121314884
NCBI-ProteinID:
XP_041104551
LinkDB
All DBs
Position
4:complement(77089761..77166560)
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AA seq
1870 aa
AA seq
DB search
MQAFGFRIRTWFPLAFLAVTAHFASQTQGQVASPTRLQFNVLSEDSVQIRWKAPRGRVQG
YKLSVTPVRGGKTQELSLQKGDNTAIIQGLIPNLEYSVNVIAISRNQESEPAQGKFTIKV
SEETSEEVSSDTQNLREDTASAETDNEILGGEQFICKTPAIADIVLLVDGSWSIGRINFR
LVRSFLENLVSAFSVGSDKTRIGLAQYSGDPRIEWHLNAFSSKESVIDAVKNLPYKGGNT
LTGLALTYILENSYKPESGARPGVPKIGILITDGKSQDDVIPPAKSLRDAGIELFAIGVK
NADENELRAIASDPDESHVYNVADFSIMSSIVESLTKTVCDRVEEQDKEIKGISGITTSL
GAPRDLVTSEVTARSFRVSWIHAPGNVEKYRAVFYPSRGGQPEEVVIDGTENTVVLKNLM
SLTEYQIAVFAVYTNAASEGLRGSETTLALPMVNDLKLYDVTHSSMRARWKGVPGASGYM
ILYAPLTEGDVADEKEVKVSDSVTDIELDGLTPNTEYTVTVYAMYGEEASDPMTGQETTL
PLSPPRNLRFSEIGHSIARVTWDAASKNARGYRIMYVKTDGSVTNEVEVDQITTNLLREL
ASQTEYTVAIFSIYDEGQSEPLTGSFSTKPVPSPLNLKLSDVSRNSLRVRWQHAAPDIVR
YRLSWVPTAGGESRELVFGGDVDTQVLSGLQQKTEYEVSLSAIFKDETESDAVAVLGTTL
SVTTTTVATTTTTTTTVVRSAVRNLVVDDETTFSLQVTWDLPDQNIRQYRVTYVSLRGDR
DEEAVSMVMVPGRANTLLLQPLLSDTEYRVTVTPVYADGDGVSSSSEGRTLPLSAPSNLR
VSDEWYNRFRITWDTPPSPTMGYRIVYQPLTAPGPALETFVGDDVNTMLILNLLSGTEYS
VKLIASYTTGSSDALTGKAKTLYLGVTNLNTYQVRMTSMCGQWQPHRQATLYRVMIESLV
DGKKEEVTLGGGASRHCFYDLMPNTQYKITVYAQLQEMEGPAVTVMDKTFPVPTEPPLPP
TTTPIPTIPVAREVCKAAKADLVFLVDGSWSIGDDNFLKILRFLYSTSGALDKIGPDGTQ
VAIAQYSDDPRTEFKLNSYSNKETLLDAIQRISYKGGNTKTGKAIKHVKEQIFTVEGGLR
RGVPNVLVVLTDGRSQDDVNKVTKNMQMEGFIIFAIGFADADYGELVNIASKPSERHVFF
VDDLDAFQKIEEQLITFVCEAASATCPSVIMNGNTLAGFRMMEMFGLVEKQYASVQGVSM
EPGTFNSFPCYRLHKDSLISQPTKYLHPEGLPSDYTITVLFRIVPETPEEPFALWEVLNK
DNEPLVGVILDNGGKTLTFFNYDYKEEFQTVTFDNPEIKKIFYGSFHKMHVAISKTTAKV
IIDCKQVGEKAINAAGNITTDGVEVLGRMVRSRGKRENSAPLQLQMFDIVCSTSWASRDK
CCEIPGLRVEADCPAMPHACTCFQDSKGPEGPAGPPGGPGIRGQRGERGELGPVGPEGPR
GDVGSTGPQGPPGPQGPSGHSIQGPPGSPGEKGEKGGLGAQGPPGVPGSGGAPGRDGTQG
QRGLPGKDGPQGQIGPPGPIGSPGVPGALGQSGPTGHLGEQGPPGPTGTKGDKGERGDMQ
AQAVVRSIARQVCEQLIQSHMARYDSILNQIPSQSVSVRAVPGPPGEPGRLGPQGPAGEQ
GLPGRPGFPGNNGEPGRPGERGLSGDKGERGSPGIGTVGPRGPQGPPGPPGEGRPGSQGQ
PGRPGNQGTPGRPGNPGPTGQAGPQGYCDASSCMGYNVGGGYGNPSDRVVQLPPSYPQTH
DSYDEEEEEEDPYAGYTSYSQQPQNPYPAPHPVQPETDSIEVRSPGSYRVSRSISKRKAK
STDKKTDITL
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctttgggttcaggataaggacctggtttcctttggcttttttagcagtgact
gcccactttgccagccagactcagggtcaagttgcttctccaacaagactacagtttaat
gtgctgtctgaagacagtgtacagattagatggaaagccccaagagggagagttcaagga
tataaattaagtgtaaccccagttagaggtggaaaaacacaggaattaagtctccagaaa
ggtgataacactgcaattattcagggtctcattccaaacctggaatactcagtaaatgtt
attgccataagccgaaaccaagaaagcgaacctgcgcaagggaaattcacaattaaagtc
tcagaagaaaccagtgaagaggtgtcttcagatacacagaacttaagggaagatactgcc
tctgccgaaactgacaatgaaatattaggaggggagcagtttatatgcaaaacaccagca
attgcagatattgttctgcttgttgatggctcctggagtataggcaggattaacttcagg
ctggttcggtccttcttggaaaacctggtcagtgccttcagtgtgggctctgataaaacc
agaataggtcttgctcagtacagtggtgatcccagaatcgaatggcacttgaatgctttc
agttcaaaggaatctgtgatagatgctgtcaagaatctgccctacaaaggagggaacaca
ctaacaggtcttgcattgacgtacattttggagaacagttacaagcctgaatctggtgcc
aggcctggtgtgcccaagattggtatcctgatcacagatggcaagtcccaagatgatgtt
attccaccagcaaagagtctgcgagatgcaggcattgagttgtttgctattggtgtgaag
aatgctgatgagaatgaactgagggccattgcttctgatcctgatgagtcccatgtctac
aatgtagctgatttcagtattatgagctctattgtagaaagcctgaccaagactgtgtgt
gacagagttgaagaacaagacaaagaaatcaaaggaatatctggcatcactacatctttg
ggggcccctcgagatcttgttacatctgaagtgacagccagaagtttccgagtcagctgg
atccatgctcctggaaatgtggagaaatatcgagcggttttttacccttccaggggagga
cagccggaggaggtggttatagatggaacggaaaacactgtagtgttaaaaaacttgatg
tccttgaccgaatatcagattgctgtgtttgcagtgtacaccaacgctgccagtgagggc
cttaggggcagtgaaacaacattggctctgcctatggtcaatgacctcaagctatacgat
gtcacccacagcagcatgagagccaggtggaaaggggtgccaggagcttctggttacatg
atcttgtacgccccgttaacagaaggagatgtagctgacgaaaaggaggttaaagtctcc
gattctgtgacagatattgaactggatggactgactcccaatactgagtacactgtaaca
gtgtatgctatgtatggggaggaagccagtgaccctatgacaggacaagaaactacattg
ccactaagcccaccgagaaacctgaggttttcagagatcggacacagcattgccagggtt
acatgggatgctgcttcaaagaacgcaagagggtatcgcatcatgtacgtgaagactgac
ggatcagtaactaatgaggtggaagttgatcaaatcacaaccaacttgctgagagaacta
gcatcccagacagagtacacagtcgccatcttctcaatctatgatgaagggcagtccgag
cctctgacaggaagtttcagtactaaaccagtaccatccccactcaacctgaagctcagc
gatgtgtccagaaacagtttaagagtaagatggcaacacgctgccccagatattgtcagg
tacaggctgtcttgggttcccactgctggtggagaatcaagagagcttgtttttggtgga
gatgtggatacccaggtcctcagtggtttgcaacaaaaaactgaatatgaggtgtcactc
tctgctatttttaaagatgaaacagaaagtgatgctgttgctgttctgggaacaacactt
tctgtaacaactacaactgttgccacaacaaccacaaccacgacaacagttgtccgcagt
gcagtgagaaatcttgtcgtggatgacgaaaccacattcagtctgcaggtgacctgggat
cttccagaccaaaacatccgtcagtacagagtgacctatgtgtctttgagaggagatcga
gatgaagaagcggtaagcatggtgatggtgcctggaagagcgaacactctcctcctccag
cccctgctgtctgacacagagtacagggtcactgttactcctgtctatgcggatggagac
ggagtcagttcctcttctgaaggacggaccttgccactttctgcacccagtaacttgcgt
gtctctgatgagtggtacaatcgcttccgcatcacatgggatactcctccttcacccacc
atgggctacaggattgtctaccagcctctgactgctccaggtccagctctggagacgttt
gtaggtgatgatgttaacaccatgctgatccttaatcttctcagtggaacagaatacagt
gtcaagttgatagcttcctacacaacaggctccagtgatgctctcacaggaaaagcaaaa
acactgtacctgggtgtgacaaacctaaacacttaccaagttcgtatgaccagcatgtgt
ggacaatggcagcctcatagacaggctacactgtacagagtgatgattgagtccctggtt
gatggaaagaaagaggaagtgacccttggaggtggagcgtccagacactgtttctatgac
ctcatgcccaacacccagtataaaataactgtctatgcccagcttcaagaaatggaggga
cctgctgtcactgtaatggacaaaacatttcctgtcccaaccgagccacccttaccccca
accaccacccctattcccacaattcctgttgccagagaagtatgcaaagctgccaaagct
gatctggtcttcttagtggatgggtcttggagtattggagatgacaacttcctcaaaatc
ctccgtttcctctacagcacgtctggagctcttgacaagatcggtcctgatggcactcaa
gtcgccattgctcagtatagtgatgatcccagaacagaattcaaactcaactcttacagc
aacaaggaaacactcctggatgccattcagcgcatttcatacaaaggaggaaataccaag
acaggcaaagccattaagcatgtcaaagagcagatcttcactgtggaaggtggtctaagg
agaggtgtccccaacgtcctggtagttcttactgacggacgatcccaagatgatgttaac
aaagttacaaagaatatgcagatggagggtttcattatctttgctattggttttgctgat
gctgactatggagagttggtgaacatcgcaagcaagcccagtgaaagacatgtcttcttc
gttgatgacttagatgcatttcagaaaattgaagaacagctgattacttttgtctgtgag
gctgcttctgcaacctgtccctctgttataatgaatggcaacaccttagcaggtttcagg
atgatggaaatgtttggacttgttgaaaagcagtatgcatctgttcaaggtgtctctatg
gaacctggaacgttcaacagtttcccgtgttacagactgcacaaggattccctcatctca
cagcccactaagtatctgcaccctgaagggctgccctctgattacactattactgtcctt
ttccgtattgtgcctgagacacccgaggagccctttgccctctgggaggtcctcaacaaa
gacaatgagcccttggttggagtaatccttgacaatggaggaaaaacgcttacttttttc
aactatgactacaaggaggaattccagactgtgacatttgataatcctgaaatcaagaaa
atattctatggaagttttcacaagatgcatgttgctatcagcaagaccactgccaaggtc
attattgactgcaaacaggttggagagaaggcgatcaatgctgcaggtaacatcaccact
gatggcgtggaagttctgggcagaatggtgaggtccagagggaaaagagaaaactctgct
ccgttacagctgcagatgttcgacatagtttgttcaacatcttgggccagcagagacaag
tgttgtgagattccaggactgagagttgaagccgactgtccagccatgccacatgcctgc
acctgttttcaggacagcaagggacctgaagggcccgctggaccaccgggtggaccaggt
atcagaggccaaagaggagagcgtggagaactcggcccagtgggaccagaagggccacgt
ggtgatgttggctccactggaccccagggacctcccggccctcagggacccagcgggcat
tccattcagggacctccgggttcccctggagagaagggggaaaagggtggacttggtgct
caaggcccaccgggtgttcctggttcaggcggagccccaggacgggatggtacgcaaggc
cagaggggactgcctggcaaagatggacctcaaggacaaattggtccaccaggaccaatt
ggaagcccaggagtgcccggagccctaggtcagagtggacccacgggacacctgggtgaa
cagggacctcctggtcccactggtacgaagggagataagggtgaaagaggtgatatgcaa
gcccaggctgtggtccgttccatcgctagacaagtctgtgaacagctaattcaaagtcac
atggccaggtatgactcaatcctgaaccagatccccagccagtcggtgtcggtgcgtgcg
gtgcccggaccccctggagagccaggtcgcctgggacctcagggccctgcaggagagcaa
ggactgccgggcagaccaggattcccaggaaacaacggcgagccaggcagacctggggag
agaggtttatcaggagacaagggggagagaggaagcccaggcattggcactgtaggaccc
agagggccacagggaccaccaggacctccaggtgaaggccgaccaggcagccaaggacag
ccaggaagaccaggcaaccaaggaacacctggacgcccaggcaatcccggcccaacaggc
caggctggcccccagggatactgtgatgcctcatcctgtatgggttacaatgtcggaggt
ggatatggtaacccaagcgatcgagttgtacagttacctcccagctacccccaaacacat
gactcttacgatgaggaggaggaggaggaggacccatatgcagggtatacttcctactct
cagcaaccccaaaacccctacccagcaccccacccagttcagccggagacagattccatt
gaggtgaggtcaccaggaagctaccgtgtctccagaagcatctcaaaaaggaaggccaag
tcaaccgacaaaaagaccgacataacactctaa
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