Polyodon spathula (Mississippi paddlefish): 121314922
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Entry
121314922 CDS
T07273
Name
(RefSeq) low-density lipoprotein receptor-related protein 12-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121314922
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121314922
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUB
Ldl_recept_a
Motif
Other DBs
NCBI-GeneID:
121314922
NCBI-ProteinID:
XP_041104610
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Position
4:80624951..80639929
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AA seq
860 aa
AA seq
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MACSLVSNKFALLVGKYVHFIISFSLLGNVVQAEHNENVYVSGISSACGDVPEQIRAPSG
IITSPGWPFEYPDRINCSWYIRTNPGEIITISFQDFEIQSAHRCSSDWISIGTYKTLDGY
RACGSSIPAPYISSQDHVWIKFHSDDSETGKGFRLSYITGKPQEPSCDWDQFHCANGKCI
PETWKCNTMDECGDNSDEELCLQSNPTTAYFFEPCAFNQFQCLSRYTRVYTCLPESLKCD
ANIDCQDLADEIDCDVPTCGEWLRNFYGTFNSPNYPDFYPPGSNCTWIIDTGDQRKVILH
FTDFKLDGTGYGDYVKVYDGLEEHPHKLLRVLTAFDSRAPVTVISSSGQIRIHFYVDKIN
AARGFNATYQVEGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDEVNCSTCQKDEFPC
TRNGICYLRSERCNYQNRCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGS
DEENCPVIVPTRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAEL
LRREAPPSYGQLIAQGLIPPVEDFPVCSASQASVLENLRLAVRSQLGFTSIRLPTTGRSR
NIWRRLFNFTGSQRSGSLALVSGDAEDGTAENCTAREPERTGAHESLLPLDSDDTDAGSE
RQDIPVAFRGVSALLPQKTPPTTAVEVTVAPSRSATPRQASRNNTGNAREVGTVEPPSLG
PGRQQLTNAFSRMTQSLRWVSFSLRRSCSTNPNQSPLRQLDHGNGRRDEDDDVELLIPVS
DAASDIDLNDCSRPLLELASEQHGQGPIHPNAATLHRARPPSRDGPCEHCGVVHTAQIPD
ACLEAIVKSETSDDEALLLC
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggcctgcagtttagtctcaaataaatttgctctcttggttgggaaatacgtccacttc
atcatcagtttcagccttttgggaaatgtggttcaagcagagcacaatgaaaatgtatat
gtttcagggatttccagtgcctgtggagatgttccagagcaaatcagggcaccgagtgga
atcatcaccagccctgggtggccatttgaatatccagatagaatcaactgcagttggtat
attagaactaacccgggtgaaatcataactatcagttttcaggattttgaaattcagagc
gctcacagatgcagctctgattggatctctattggaacttacaaaacccttgatggctat
cgggcttgtggctcctcaattccagcaccttacatctcttcccaggaccatgtgtggatc
aaatttcattcagatgatagtgagactgggaaaggctttaggctttcttacataacagga
aaacctcaggagcccagctgtgactgggatcagtttcactgtgcaaatgggaaatgcatc
cctgagacttggaaatgcaacacaatggatgaatgtggagacaactcggatgaagagcta
tgtttgcagtccaaccccactactgcctacttttttgagccttgtgcatttaaccagttc
cagtgtctttcacgctacaccagagtttacacttgccttccagaatcccttaagtgtgat
gccaacattgactgccaagatttggcagatgagattgactgtgacgttccaacatgtggg
gagtggctcagaaacttctacggtaccttcaactctcccaattatcctgacttctaccca
cctgggagcaactgcacctggattatcgacacaggcgatcaacgtaaggtcattttgcac
tttacggatttcaagcttgatggtacaggctatggggactatgttaaagtgtatgatggt
ctggaagagcatccccataagcttctgcgtgtcctgacggcatttgactctcgagcaccg
gttacagtcatctcttcctctgggcaaatccggattcacttctatgtggataagatcaat
gcagctcgtgggtttaatgccacctaccaggtggaaggtttttgcttgccatgggagatc
ccatgtgggggcaattggggctgttacacagagcagcagcgatgcgatggctactggcac
tgtcccaatggcagggatgaggtgaactgcagcacatgccaaaaggatgagtttccatgc
accaggaacgggatctgctacctccgctcagagcgctgtaactaccaaaaccgctgtccc
aatggctctgatgagaagaactgcttcttctgccagccaggcaacttccactgcaaaaac
aaccggtgtgttttcgaaagctgggtctgcgactctcaggatgactgtggagacggcagc
gatgaagagaactgtccggtgattgtcccaacccgggtgatcactgcagctgttattggg
agtctcatctgtggtctgctccttgttatagcgctcgggtgcacatgcaaactttattcg
ctgaggatgtttgagcgaaggtcatttgaaacccaactgtcaagggttgaggcagagttg
ctaagaagggaggcacccccctcctacggccaactgattgcacaaggtttgatcccgcca
gtggaagatttcccagtgtgctcagcaagccaggcatcagtgttggaaaacctcagacta
gcagtacgttcccagcttggatttacttcaatcagacttccaacgactgggagaagcagg
aacatttggagacgcctcttcaatttcacagggtctcaacgctctggttccctggcttta
gtctctggtgatgcagaggatggcactgctgaaaactgcacagccagagagcctgaaaga
actggtgcacacgaaagtcttcttccccttgattctgacgacactgacgcagggagtgag
aggcaggacatcccagttgcattcaggggagtctctgctttgctacctcagaagacccca
ccaacgaccgcagtggaggttacagtagcaccgtcccgaagtgcaacaccccggcaggca
agcaggaacaacacaggcaatgcaagagaagttggaactgttgaacccccctctctcggc
ccaggtagacaacaactaaccaatgcattcagtcgtatgactcaaagtcttcgatgggta
agcttctctctcagaagatcctgctcaacaaacccgaaccaaagccctttacggcagctt
gatcacgggaacggtagaagagatgaagacgacgacgtggaactgttgattcctgtttct
gatgcagcatcagacattgacttgaacgactgttctaggcctttacttgaacttgcctca
gaacaacatgggcaggggcctatccaccctaatgctgctacattacacagagcaaggcca
cctagcagggatgggccttgtgaacactgtggtgtagttcatactgctcagatacctgat
gcatgcttggaagcaattgtaaaaagtgaaacgagtgatgatgaagcattgctgctttgt
tag
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