Polyodon spathula (Mississippi paddlefish): 121314926
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Entry
121314926 CDS
T07273
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121314926
04121 Ubiquitin system [BR:
pspa04121
]
121314926
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
Other 90S particles
121314926
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121314926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IFT122_1st
eIF2A
MIOS_WD40
Beta-prop_NUP159_NUP214
Beta-prop_IFT140_1st
KNTC1_N
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121314926
NCBI-ProteinID:
XP_041104629
LinkDB
All DBs
Position
4:complement(80922058..80942285)
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYIRETKKDIQRVPRNYDPSLHPFEVPREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCMAKHPKSLSTILSGACDGEVKIWNLTQRECVRTLQAHEGFVRGMCMRFC
GASFFTVGDDKTIKQWTMEGPAFGEQEEPLNTILGKTVYTGIDHHWKDGIFVTCGQQVDI
WDEQRTSPIRTFTWGVDSISSVKFNPVETCLLASCASDRNIVLYDMRQAAPLKKVIMELR
TNTVCWNPMEAFTFTGANEDYNLYTFDMRRLDAPVMVHMDHVSAVLDVDYSPTGKEFVSA
SFDKSIRIFPVDKGHSREIYHTKRMQHVICVKWSSDNKYVLCGSDEMNIRLWKANASEKL
GVITPREKAALNYSEKLKEKFQHHPQIKRIARHRHLPKAIFNQAKELRAMKEARRKKEMN
RRKHSKPGSVPFVSEKRKHIVAVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtaaaagtacttagcagaaacccggacgattacattcgtgaaaccaaaaaggat
atacagagagtcccaagaaactatgacccatcactccacccttttgaggtacctcgagag
tataccagggctcttaacgccaccaaactggaacgtgtgtttgccaaaccgttcttggca
tcactggatggtcacagggatggagtgaactgtatggccaaacaccccaagagtttgtct
acaattctttcaggcgcctgcgacggagaggtgaaaatctggaacttgacccagcgtgaa
tgtgtccgtactttacaagcacacgaaggttttgtgcgggggatgtgcatgcgattttgt
ggtgcctctttctttacagtcggagacgacaagactatcaagcagtggactatggagggg
ccagcgtttggagaacaagaagaaccccttaacacaatacttggaaaaacagtatacaca
ggaattgaccatcattggaaggatgggatttttgtaacatgcggccagcaggtggatatc
tgggatgagcagaggaccagccccatccgcacattcacctggggcgtggacagcatcagc
agtgtcaagttcaaccctgtggagacatgtcttctagcaagctgtgcttcagacagaaac
attgtgctatatgacatgagacaagcagctccactgaagaaggttataatggaactgaga
actaatacagtatgctggaatccaatggaggcttttacctttacaggggcaaacgaggac
tacaacttgtacacttttgacatgcgtcgtctggatgccccagtgatggtgcacatggat
cacgtgtctgcggtcctggacgtcgattactccccgactgggaaggagtttgtctctgcc
agttttgataaatctattcgcatcttccctgtagacaagggccacagcagagagatatat
catacaaaacgcatgcagcatgtcatctgtgtgaagtggtcttctgacaacaagtacgtt
ctttgtggctcggatgaaatgaacattcgcttatggaaggctaatgcttctgaaaaactt
ggtgtgattaccccacgggagaaagctgctctgaactacagtgagaagctgaaggagaag
ttccagcatcacccccagatcaaacgcattgctcgccaccgccacctacctaaagccatc
ttcaatcaggctaaagagctccgtgccatgaaggaggctcgccgcaaaaaggaaatgaat
cgtcgtaagcacagcaagccaggatctgttccatttgtgtcagagaagaggaagcacatt
gtggctgttgtgaaatag
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