Polyodon spathula (Mississippi paddlefish): 121314977
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Entry
121314977 CDS
T07273
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121314977 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121314977 (rad54b)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
121314977 (rad54b)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
AAA_22
TusA
Motif
Other DBs
NCBI-GeneID:
121314977
NCBI-ProteinID:
XP_041104723
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All DBs
Position
4:83245291..83279569
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AA seq
950 aa
AA seq
DB search
MRRSAAPSQLFGNAAKKPRFIPPGTLHPTSVPVQKTTPTLPLVTDNKPLHESSGKPENNV
PAKALVRILNPATLVDTKENCLREKQKAEAQLEQVDKLNTGSSVNASSKVYQNQPKSARS
FLPPKSFCSPSSQRTNPVKPDVGQNEPTSIAKYFSVVWCKASKKKHKRWEGDAVLVIRGR
TVTLKDIEGKDIGRGTGYKSAELEGLTENQTLMVGGKEIEIMGTILPEDFSSGRCFHSVP
VEAVNQASGPVQQALLKPFSKPLISGCKGNSQNEEAKQSLPVVCKPRHNPFTPDALVMPR
PSMNHQWMFNKAGLQVVDVVVDPYLSTHLRPHQREGIIFLYECVLGMRLNGRCGAILADE
MGLGKTLQCISLVWTLLRQGPYGNKPVIKQVLIVTPGSLVRNWSKEFQKWLGTERIHVFA
VDQDHKVEDFINSPLCSVLLISYEMLLRSLEQIQKVDFNLIICDEGHRLKNSNIKTSSAL
MSLSCDRRVILTGTPVQNDLQEFYAIIEFVNPGILGSACTYRKIYEEPVIRSRQPSATEE
EKQLGQERAAELGRLTGLFILRRTQEIINRYLPPKVEWIVFCEPAALQLEVYRKLLTSCT
VRSFLQGATENSPHLVCIGALKKLCNHPGLLHTAIKKKEKSPKSRPDEVCESSLYEGIAD
LIPEGCAADGYKTEDSGKLQVLADLLAAIRQLSPAERVVLVSNYTQTLDMLQEMCQGFGY
SYTRLDGQTPISQRQQTVEGFNSRYSSDFVFLLSSKAGGVGLNLVGASHLILYDIDWNPA
NDMQAMARVWRDGQKRTVHIYRFLTTGTIEEKIYQRQISKQGLSGVVVDLTKKSNHTSFS
VEELRNLFTLHEDSECVTHDLLNCSCGSEAGTEGLAEDVKLVVQRSCQLGHSHEKPDSQK
HLSMSELMQWKHYSGKTPSFPDPFLDRARKHITFAFQNKTEPQTPSNKEA
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagatcagcagccccaagccagctgtttggaaatgcagcaaagaaacccaggttc
atccctccaggtacactgcatccaacctctgtgcctgtacagaaaactacaccaacattg
ccactcgttacagacaacaagcctcttcatgaaagcagtggtaaaccagaaaacaatgtt
ccagcaaaagccttagtcagaatcttaaatccagcaacactggtggataccaaggagaac
tgtctaagggaaaaacagaaggctgaagctcagcttgagcaagtggacaaactaaacact
ggatcttcagttaatgcttcatcaaaggtctatcaaaatcaacccaaatcagcccggtca
ttcttgcctccaaagtccttttgcagcccttcctcgcagaggacaaacccggtcaagcct
gacgtaggacagaatgaaccaacaagtatcgctaagtacttcagcgtggtgtggtgcaag
gcatcaaagaaaaaacacaagaggtgggagggagatgcagtattagtgatcagagggagg
acggtgacactgaaggacattgaaggcaaagacattgggagagggactggatacaagtct
gcagagctggaaggcctcactgaaaaccagactttgatggttggtgggaaggagatagag
ataatggggaccatactgccagaagatttcagcagtggcaggtgtttccattcagttccc
gttgaagctgtcaatcaggcctctggtccagtccaacaggctttactgaagccgttttcc
aagcccttgataagtggctgcaaagggaacagccagaatgaagaagccaaacaaagcttg
cctgtggtctgcaaaccacgacacaaccctttcacaccagatgcattggtcatgccacgt
ccctccatgaatcaccagtggatgtttaacaaggctggtttgcaggtggtggatgttgtt
gtggacccttacctcagtacccacctgcggccacatcagagagagggaatcatctttctt
tacgaatgtgtgctggggatgagattgaacggcaggtgtggtgcaatccttgctgatgaa
atggggctaggaaagaccctacagtgcatctcactggtgtggacccttcttcgacaggga
ccctacgggaataaaccagtgataaagcaagtgctgatcgtcacaccaggcagcctggtg
agaaactggagcaaagagttccagaagtggctggggacagagcgaatccatgtctttgct
gtagatcaggatcacaaggttgaagattttatcaattcccctctctgctcggtactgctc
atcagctatgaaatgttgctccggtccctggagcagattcagaaggtcgacttcaacctg
atcatatgtgatgaagggcatcgcttaaaaaacagcaacataaaaacatcctccgcactt
atgagcctgtcttgtgacagaagagtcattcttacaggcacaccagttcagaatgatctc
caagaattctacgctataatcgaatttgtgaatccagggattctcgggtctgcctgcacc
tacagaaaaatttatgaagagcctgtcatcaggtctcggcagccttcagcaaccgaggaa
gaaaagcagcttggccaagaaagagcagctgagcttggtcgtctgactgggctctttatc
ctgaggaggacacaggagatcattaacagatacctccccccgaaagtggaatggatcgtc
ttctgtgagcctgcagctttgcagctggaagtctaccgcaagcttctgacatcttgcacc
gtcaggtccttcctgcagggggcgactgagaacagccctcatttggtctgtatcggggct
ctaaagaaactttgcaatcacccaggcttgctgcatactgccatcaagaaaaaagagaag
agtcctaaaagcaggcctgacgaagtttgcgagagctctctctacgaggggatagcagac
ctcataccagagggatgcgcagctgatggatataaaaccgaggattctgggaagctgcag
gtactggctgacctgctggcagcaatccgccagctcagtcctgctgaaagagttgttctt
gtttccaattacacccagactctggacatgctgcaggaaatgtgtcaaggttttgggtac
agctacacacggctcgatggacagaccccaatatcccagagacagcagacagtggagggc
ttcaatagcagatactcctcagacttcgtgtttctgttgagctcaaaagcaggaggtgta
ggtttgaacctggttggggcatcgcatctgattctgtatgacattgactggaatcctgcc
aatgatatgcaggccatggccagggtttggagagatgggcaaaagagaacagttcacatt
tatcgcttcctgaccacaggtactattgaggagaagatctatcagagacagatcagtaaa
cagggtctctctggagtagtggtggatctgacaaagaaatccaatcacaccagcttctct
gtggaagagctccggaacctgttcacactacatgaagactcagagtgtgttactcatgac
ctgctaaattgcagctgtggatctgaagcaggcactgaaggtctcgctgaagatgtaaag
ttagtggttcagagaagctgccagctgggccacagtcatgaaaaacctgactctcagaaa
cacctgtcaatgtcagagctgatgcaatggaaacactactctggaaaaacccctagcttt
ccagatccgttccttgacagggctaggaaacacattacatttgcctttcagaataagact
gagcctcaaacaccttccaacaaagaggcatga
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