Polyodon spathula (Mississippi paddlefish): 121315028
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Entry
121315028 CDS
T07273
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121315028 (vps50)
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Others
EARP complex
121315028 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
121315028
NCBI-ProteinID:
XP_041104825
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Position
4:86176180..86351360
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AA seq
988 aa
AA seq
DB search
MQKIKSLMTRQGPKSPQESLSDLSPVENVRIPSKEELREMREQPIDPQAEQEIINSIEEV
YFSNDSFDIVEHELEKLPPVLNLQDIEEYRDKLKKQQAAVSKKVADLILEKQPSYVKELD
RVTSLQANLQLGAVICTNARRQLGFAKEGFTQASLGLLANQRKRHLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKSFDINHYTKVQQAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLSDLCKALWEVVLSYHRTMEWHEEYDNEETVPASDG
NSMGGTEESNFDRSYVRKKLEHGLTRIWQDVQLKAKAYLLGTDMSNFKYDDFIFVLDVIN
RLMLVGEEFCGSKSEVLQESIKKQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFSI
VQLHEFKFMGQSRSPSVSPSKHSATTSTAAVSLFEQYHNGGNPFEMQTESKDEETEDVLA
SNGYESDELEKCAYQDYDSDSDVPEELKRDYVDEQTGDAPVKSVSRDTLRSRKKSDYSLN
KVNAPILTNTTLNIIRLVGKYLQMMNILKPIAFDVIHCMSQLFDYYLYAVYTFFGRNDMH
VPNPPVSVPGKEQSTPRQTTVCSYESSGLGLISSRLRTTLNRIQESLIYLEAVPETTGSH
VTAEERKEKVPSPHLSQLVVLTASGTLYGLAERVVATESLVFLAEQFECLQTHLDTMIPA
AKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQHNIYV
DVLLKEFEQFSKRLGDVSRQVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRAL
MQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSTKQLTNLV
TVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaaatcactcatgacccgacagggtcccaaaagtccccaggaaagcttg
agtgacctcagtcctgtggagaatgtcaggattcctagtaaggaagaactacgggaaatg
agagagcaacctatcgatccacaagcagaacaagagataattaatagtattgaggaagtt
tacttctccaatgattcttttgacattgtggagcatgagctagagaaacttcctcctgtt
cttaatcttcaagatatagaagaatacagagataaactgaagaagcaacaagcggctgtg
tcaaagaaagtagcagatctaatcctggaaaaacagccttcatatgttaaggaattggat
cgtgttacttcactgcaagcaaaccttcagttgggagcagtcatctgcacaaatgcaaga
aggcaacttggttttgcaaaagaaggttttacacaagcaagccttggccttcttgccaat
caaaggaagagacatttgctgactggactgctgaaatctctgagaacaataaaaacactg
caaaggactgatgtaagattaagcgaaatgttagaggaggaagattatcctggagctatc
cagctgtgcttggaatgccaaaaggcagccagcacattcaaacactacagctgtataagt
gaattgaattcgaaactgcaagacactcttgaacaaatagaggaacaattggatgtagcc
ttgtcaaaaacctgcaagagctttgatatcaatcattacaccaaagttcagcaggcatac
acgcttctgggaaaaactcaaactgcaatggaccaactacatatgcacttcacccaagca
attcacaacacggtgttccaggtggttctcgggtatgtggagctgtgcgctgggaatgct
gacacgaagtttcagaagatgcagtacaaggacctctgtacacatattactccagacagc
tacattccctgcctttctgatctctgcaaagccctctgggaagtcgtgctcagctaccat
cgaactatggagtggcatgaggagtatgacaatgaagagacagtgccagcctcagatggc
aacagcatgggtggcacagaggagtccaactttgatcgcagctatgtgagaaagaaactg
gagcacggtctaacccgcatctggcaggatgttcaattaaaagccaaagcctatttgctt
ggaacagatatgtccaactttaaatatgatgacttcatatttgtactggatgttatcaac
aggctgatgctagtcggggaggagttttgtggcagcaagtcagaggttttgcaagagtct
attaaaaagcaaagtgtgaattatttcaaaaactatcacagaacacgcctcgaggagctc
agaatgttcttagaaaatgaaacctgggaactctgccctgtcaagtcgaacttcagcatt
gtgcagctacatgaattcaaattcatgggccagtcacgctctccttcagtgtcccctagc
aagcactccgccacaacatccacagcagcagtgtctctatttgaacagtaccataatgga
ggaaatccattcgagatgcagacagagagcaaagatgaggaaacagaagatgtgctggct
tctaatgggtatgagtctgatgaattggagaagtgtgcttaccaggattatgatagtgac
agtgatgtcccagaagaactcaagagagactatgtggatgagcaaactggagacgctcct
gtgaaaagtgtgtctcgagataccctcaggagcaggaagaagtcagactacagccttaat
aaggtgaatgcacccatcttgacgaacactaccttgaatataatcaggcttgttgggaag
tacttgcagatgatgaatatcctgaaaccaatagcctttgatgtgatccactgcatgtcc
caattatttgattactacttgtatgcagtctacacattctttggccgaaatgatatgcat
gtgcctaatccgccagtttctgtgcctggcaaagaacagagcactcctaggcagacaaca
gtctgctcgtatgaatcatccgggcttggtctaatcagcagtagactccgaacaactctg
aacagaatacaagagagtcttatttacctggaggcagtaccagaaactactggcagccat
gttactgctgaagagagaaaggaaaaggtgccaagcccacatctcagccaattggtggtt
ttaacagccagtggaacactgtatggacttgcggaaagagtggttgctacagaatccttg
gtgtttctggctgagcagtttgagtgtcttcaaactcatcttgacactatgattcctgca
gcgaagaagccctttcttcagcagttctattcccagactgtatcaactgccagtgaactg
cgaaaacccatttactggattgtggctgccaaagccatagattatgaacagatgctgctg
cttatggctggagttaaatgggacataaaagaaattatgtcgcaacacaatatatacgtg
gatgtccttttaaaggagtttgagcagtttagcaagagacttggagatgtttccaggcag
gtgcgcatccctttgcctgtgtctaatgtactttgggaacactgcattcgactggctaac
agaactcttgtggaaggctatgcaaatgtcaagaaatgcagcaatgaaggacgtgccctg
atgcaactggactttcagcagtttttaatgaagctggagaagctgaccgacatcaggccc
attccagataaagagtttgtggagacctacattaaagcctactatctgacagagaacgat
atggaacagttcatcaagaaccacagggaatattccacaaagcagctgaccaatctggtg
actgtttgcctcggatcccacataaacaagaaggcgagacagaaactgttagcagctatt
gatgacatcgacagaccaaaaagatag
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