Polyodon spathula (Mississippi paddlefish): 121315049
Help
Entry
121315049 CDS
T07273
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121315049
Peptidases and inhibitors [BR:
pspa01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
121315049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
121315049
NCBI-ProteinID:
XP_041104864
LinkDB
All DBs
Position
4:complement(87427773..87515118)
Genome browser
AA seq
1166 aa
AA seq
DB search
MWKRAAVLWLLLLAVNPDVAHGQNRKKTGRKPSNLILRDEGKVMLCPLDIAFIMDSSESA
KNIMFEREKAFVQDFGERVMQMTSPSGMKLNIKLAVLQYSSTVKIEHPFRDWQNIQVFKN
RVRSMVYIGHGTYSSYAITNTTQLFEAETKPGSVKVALLMTDGVDHPRNPDILGAAATVK
NYGIKLFTIGLSALANESANIVKLRSIASTPAEQYVHSLSDPYLQDKLLEQLSRIVVDGC
QQPKSPCVCEAGEKGAPGSPGSVGRDGAKGNKGSKGESGINGLPGNQGPEGRPGFKGNKG
ERGDCGSPGTKGDRGPEGPPAPRGPRGEKGLIGPTGDQGPEGMPGPKGDRGPTGASGPPG
DNGIGFPGPKGDKGSQGRPGPTGPIGIGEPGPPGPPAPSGIQGNIGPPGEGLPGAKGDRG
YEGPRGTRGLPGLGIKGEKGDFGPTGLPGSAGLPGNGIQGEKGDQGPVGPIGPRGPPGIG
FSGPKGDQGFPGERGLPGDMGVGETGPKGDAGPPGLPGIQGVSGEDGAVGPKGETGSQGP
VGPEGAPGKGISGEKGDKGDRGSRGLPGLQGQVGAMGPKGVTGNTGQTGKPGPSGRGIQG
PKGDPGPVGPSGPVGDPGIGIPGPKGERGLPGPPGPIGPKGDGYPGIQGPPGLPGLPGEA
GPEGKGLPGSKGDRGLPGFPGPAGLHGIGAVGPKGPVGQAGPPGPPGLPGEDIQGPKGEP
GFQGVPGPRGPPGEGFPGEKGDRGFSGDRGRQGDKGELGEPGPTGTPGMPGQKGDMGLTR
EEIIKIIREICGCGVKCRESPLELVFVIDSSESVGPENFDVVKDFVSALIDRVSVSREGT
HIGVVLYSHINVVVANLQQHSNQDDMKAAVRSMTYLGEGTYTGSAIKRANQIFQASRPGV
RKVAIVITDGQADRRDSVKLEAVVREAHSASIEMFVIGVLNRSDPFYQNFKNEMNMIASD
PDEEHIYLIDDFMTLPALESKLLSRICESEDGVLFSPVPKSILPPGIATTSDLIKEKLER
TDTPFVSGDYSTLSREPSLPGESVTPPGPRGTRIGIVNDRIAPLSNRTSVAPVAGPSVTT
KKTFIPVTENQPTTPPAPPTQETFFSGLRCEETLEPGPCREYVVKWYYDSTANACAQFWY
GGCNGNGNRFDTEDDCKDYCVRGKKK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaagagctgctgttctttggcttttgctgttggcagtgaacccagatgtagcc
cacggacagaacagaaaaaagacgggtcggaaaccaagtaaccttatactaagagatgaa
ggaaaggtgatgctctgtcctttagacattgccttcatcatggatagctctgaaagtgcc
aaaaatatcatgtttgagagggagaaggcttttgttcaggattttggtgaaagagtaatg
cagatgacgtcaccttctggcatgaaattaaacatcaagttggcagtgttacagtacagc
agtactgtgaagatagagcaccccttccgagactggcaaaacattcaagtcttcaaaaac
cgggtccgctcaatggtatatatagggcatggtacatattcatcctatgcaatcactaac
accacccaactgtttgaagcggaaacgaagcctggcagtgtcaaagtggcattactgatg
actgatggagtggaccatcccaggaacccagacatcttgggagcagcagctactgttaag
aactatggcatcaagctctttaccattgggttatcagcccttgctaatgaaagcgccaat
attgtcaaactgcgctccatagctagtaccccagccgaacaatatgtgcatagcctgagt
gatccataccttcaagataaactccttgagcaattgagtagaattgttgttgatgggtgt
cagcagccaaagtcgccgtgtgtttgtgaagcaggagagaaaggagctccaggaagtccg
ggcagtgttggtcgtgatggtgctaaaggtaacaaaggatccaagggtgagtctggcatc
aatggacttcctggaaatcaaggccctgagggcagacctggttttaagggtaataagggt
gaaagaggtgactgtgggagccctggtacaaaaggagatagggggcctgaaggaccacct
gcaccaaggggacccagaggagagaaaggtttaattggaccaacaggggaccaaggccct
gaaggaatgcctggacctaaaggggatcgtggtccaactggtgcctctggccccccaggc
gataatggtattggatttcctgggccaaagggggacaaaggttcacagggcagacctggg
cctactggtccaataggcattggggaaccaggaccaccgggtcctccagctccttcaggg
atacaggggaacataggacctccgggagaaggacttcctggtgcaaagggggacagaggg
tacgaaggacccagaggaactcgtggcttaccaggattggggattaagggtgagaagggt
gattttggacctactgggcttcctggatcagctggccttccaggaaatgggattcaggga
gaaaagggggaccaaggtcctgtaggcccaattggtcctagagggccaccagggatagga
tttagtggcccaaaaggagaccagggttttcctggagaacgtgggttaccaggtgacatg
ggagttggtgaaacaggacctaaaggggatgcagggccaccaggactgcctggaattcag
ggtgtttcaggggaggacggggctgtgggaccaaagggtgaaacaggttctcaaggaccg
gtgggacctgagggggctcctggaaaaggaatatctggagaaaagggagacaaaggggac
agagggtcaagaggattacctggattacagggacaagttggagcaatggggcctaagggt
gtgacaggaaatactggccaaactgggaagccaggcccgtctggtcggggaattcaaggg
ccaaaaggtgacccaggtccagtaggaccatctggaccagtcggggacccaggaattgga
atacctggaccaaagggtgaaagaggattgcctggacctccaggaccaattggaccaaaa
ggggacggctatcctggcattcagggaccacctggattaccagggcttccaggagaagca
ggccctgaaggaaaagggctgcctggttcaaagggagaccgaggattaccaggctttcca
ggaccagctggactccatggaattggagctgtcggacctaagggacctgttggtcaggct
ggtccaccaggacccccaggtttacctggagaggatatacaaggacccaagggagagcca
ggatttcagggagtgcctgggcctaggggcccaccaggtgaaggcttcccaggagagaag
ggggatcgtggattttcaggagatcgagggaggcagggtgacaaaggagaacttggagag
cctgggccaactggaacaccagggatgcctggacagaaaggagatatgggccttactaga
gaagaaatcatcaaaataatcagagaaatctgtggttgtggtgtaaaatgcagagaaagt
cctcttgaactggtgtttgtgattgacagttcggaaagtgtcggaccagaaaactttgat
gttgtcaaagactttgtcagcgccctgatagacagagtttctgtgagtcgagaaggtacc
catattggcgttgtgctgtacagccacataaatgttgttgtggccaacctccagcagcac
tcaaaccaagacgacatgaaagcagcggttcgctcaatgacatatctcggggaaggcacc
tacacaggcagtgccataaagagagctaaccagatcttccaggcctccaggccaggggtt
aggaaagtggcaatagtcataacagatggacaggcagacagacgtgactctgtgaaactg
gaggctgtggtgagggaggcccattctgccagcattgaaatgtttgtgattggagtattg
aacaggagtgaccccttttatcaaaacttcaagaacgaaatgaatatgattgcctcggat
ccagatgaggagcatatttatctgattgatgactttatgacacttccagcacttgagagc
aaactactcagcagaatctgtgaaagtgaagatggcgtcctgtttagtccagtgcctaag
tctatattgccacctggtattgccaccacttcagaccttatcaaagagaaacttgaaaga
acagacacaccttttgtcagtggagattacagtacgctgtctagagagccaagcctacca
ggtgaatcagtcactccaccaggaccccgagggaccaggattggtattgtgaatgacaga
attgctcctttgtcgaacagaacttccgtcgctcctgtagctggtccatcggtgactaca
aaaaaaacatttatacccgtgactgaaaaccaaccaacaactccaccagctccaccaacc
caggaaacctttttttcaggtctaagatgtgaagagactttggaaccaggaccatgcagg
gagtatgtggttaaatggtactatgactccacagcaaatgcatgtgcccagttctggtat
ggagggtgtaatggtaatgggaaccggtttgatacagaggatgattgtaaagactattgt
gttagaggaaaaaagaaataa
DBGET
integrated database retrieval system
