Polyodon spathula (Mississippi paddlefish): 121315319
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Entry
121315319 CDS
T07273
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121315319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121315319
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121315319
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
121315319
RAVE complex
121315319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_WDR19_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
121315319
NCBI-ProteinID:
XP_041105290
LinkDB
All DBs
Position
1:20177224..20248771
Genome browser
AA seq
3094 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFAVGNINDQPFTAYASGCDIVILGSNFERLQIIPGAKHGNILV
GCVDCSMQQGKIAASYGNVVCIFEPVQLLNRKNTDSSRINCQWQRSGQFVLQSIVHNLAW
DPTGTNLLTGSNSLQLWSNVGLRSCIEEEEKQAMTINNGLGNWKCIWLSKTASSVHLMKF
SPEGDFFATAGKDDCLVKVWYHTSSWQSGVTSLNSPPEKAAQGEVNYSFVYLAHPRTVTG
FSWRKTSKYMPRGSVCNVLVTCCKDSVCRLWAETLLPSDSLLSGHGPSQSNDPVTSTSGL
KRHAPNKHRVQNALELNLKHSRRGRKSPAMAADTGCLPHQQDTHEAHRNNSSVHANALCH
FHIAASINPATDIPLLPSITSMSLDDDGEDQNGPFVVHWLNNKELHFTLSMEVFLQQLRK
SLEQQPPETSGEEPCQPDEDAIYKDEQKGSTKKSEYLNAGALPLPAATIDHEIEILLAEW
NKNADMMFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSI
VMYACTKNVDLAVQQGKQKPPGMIRSSSMLISFGNNKSSSSLKLSIFTPNVLMISKHADG
SLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPEV
DSMNDNRGLDNTMPRDPLSKRLNRVSVDATFQDPHAIYSELILWRVDPVGPLSFSGGVSE
LARINSLHVSAFSNVAWLPTLIPSDCLGAYGNSPSACFVASDGRSLRLYQAVIEAKTLLS
ELSNPDISKYVSEVFNIVSQQSTARPGCIIELDAITALHGRETQLLHVFEEDFILGKKMK
GDGIQETEEIASSETGSQKGFSQKFYLVVIEYTQSGCSLLHMWHLHLKSVQITEDDQHDK
TEPQSLLSPQDGQNSFSPEKSSSPLSQKYKACRTNLHSASRLTLISERVYSQQMKLPDRV
EIIRATPSAGHLSSCSIHPTGLAPYLLATSCSDGKVRFWRCRVDPESLFSKVEDSGRCSY
TYIWEEWPLLIEDGFLNSSTVSVMGRPIEVSCCNTSRIAVAYKQTSSQYCGKYFTMHVGI
FECESTGGSQWILEQTLNLDEPSTMLDPRISIDRNLTVYNKQDVYLSSDIHVMPSAKHLI
YLDWVSREDGSHILTVGIGSKLLLYGQLSGKIPEKGSKEGPAASALPMWEGAKDHSYSRF
VLLRSVDLVASFEGSLPLPVSLSWVRDGILVVGMDCEMHVYSQWQPPAKSELTTAETDCG
STTSLITSIRQGHANGVNQKPAKKTLTRSMTSLAQKLSGMKTMYDLPVEMEDNGLFEAAH
DLFPTLPQYHPVQLMELMDLGKVRRAKAILSHLVKCIAGEVVALKDNSTNHERRLRSLSI
SASGSTARDPKTFSKTENSDYTEIDSIPPLPLYALLAADEDTSHKVIDKSTNSIMNKENR
EAQGDDYDELFQTPSLGTDDFGLLDTDDEEDTKPKVIDLSQYSPTYFGPEHAQVLSSHLL
HSSLPGLTRMEQMSLMALADTIATTSTDVGESRHKSTGGETLDECGLKFILAMRLHTFLL
TSLPPAHRSQLLHQGLSTCHFSWAFHSEAEEELLNMLPAMQKGNPTWSELRAMGVGWWVR
NTNTLRRCIEKVAKAAFQRNNDPLDAAIYYLAMKKKAVVWGLYRSQRDSKMTPFFNNNFS
EDRWRKAALKNAFALLGKQRFEHSAAFFLLAGSLNDAVEVCLEKMNDIQLALVISRLYES
EFEVSSTYKNILQKRILGYDSHERTFTLSQMHQDPFFRSMAYWILEDYSKALDTLLEQPV
REEDDAGHTGVGTMSYSCNPMVFNFYNYLRTHPLLLRRHFASSEKPSTKMGLTVENSFAD
TINLVERRLFFTAAHAHFKAGCPMLALEVLSKMPKVVKKSKPLLSKESSSLSEGTKDSLL
SPETKQEKDSDCDWSQTVVNGFGLVSHCLTNGQSESVLSLDWSQSSLIVQDEALDLNWDS
DKEHETDDEESGLSMKDIKTKNNNIIIKGEPDNSSAYTDSRTAGEVDVITPSEDTIAAQL
KFSACLKILTTELRTLSTGYEVDGGKLRYQLYHWLEREVVALQKACDYNPDLEDLEEGIA
GNADETVTGQSAEDLVHQQRSIQQKDYLQKRRLWLLKNQPLFRMFLSYCSLHGSHGGGLG
SVRMELILLLQESQQESSTQTALSPVPHQTSIPLLLACTASAKTVVANPVVYLTNLAHDI
LHTIIDLDSPPHPDSKNNKVYVMHTLAASLSACIYQCLCNSHSYSASHANQFTGIIYQSF
LLTHQHPVRTMSLDETVTPNTSPAQWPGIVALIRLLNSSGKEDQPGLTVLLCEILTAVFL
SLFVHGLATHSSNELFRIVAHPLNSKMWAAVFGGGARIPVKEQSPKKPATGRPFSIPSPH
QVVVFSMECVGFSKSLTAISTHRPTSPAVTTVNDESEKHHKRFKLLSTKGASRESLQSPT
SPVVNQKMPVFREKFIPPELSIWDYFIAKPFLPPSESRVEYDSEESQGSDDEDDDDEEED
VYVSETQLQEHSNPNSYSWSLMRLAMVQMVLYNLKTFYPIAGHDLSELPVGSPLCHSILK
TLQRWEQVLLKRLEIFGGPPSKFISSHTLEDAVSPGPAILRHKALLEPTNTPFKSKQRSA
LTVKRLWQYLVKQDEVQETFIRNIFTKKRGQNELIEDHNENAKNTMMEEPNINKIEADLG
YPGGKARIIHKESDIITAFAINKANRNCIAIASTHDIQELDVSAILATQILTWVDDEVEL
ENKGSEDFLMIHARDDLSCIQGTTPYTHSSPGTPINMPWLGGMQTGRGASVLIKRNINNA
RRMASHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRPPGNSRVTRIRFNYQGNKFGIVDA
DGCLSFWQTNTIGSTPKPYLTLQCHNKTANDFVFVGSSSLIATAGQSSDNRNVCLWDTLV
TPANSLVHAFICHDSGATVLTYAPKHQLLISGGRKGFVCVFELHQRQQRQTFQAHDSPVK
AVAVDPTEEYFITGSAEGSMKVWSLSTHSLIHTFINEHARQSIFRNIGTGVMQIEAGLAN
HIFSCGADGTVKMRILPDCFSTMNGVKNDVKCVI
NT seq
9285 nt
NT seq
+upstream
nt +downstream
nt
atgaatctacaccaagtacttacaggagctgtcaatccaggagataactgttttgcagtg
ggaaacattaatgaccagcctttcacggcatacgcatcaggatgtgacattgtgatttta
ggtagcaactttgaaaggctacagatcatccctggggctaaacatggaaacattctggtt
ggctgtgtagactgttccatgcagcagggcaagattgcagcatcatatgggaacgtggtt
tgcatctttgagcctgtgcaactcttaaatcggaagaatacagattcatcaagaataaac
tgtcaatggcagaggagtggccaatttgtattgcagtctatagtgcataatctagcatgg
gacccaacaggaacaaatctcctaacagggtccaatagtttacagctctggtccaatgtt
ggcttaagatcatgtatcgaagaagaggagaaacaggcaatgaccatcaacaatggcctt
ggcaactggaaatgcatctggctttccaaaactgcatcttcagtccatttaatgaaattt
tctccagaaggtgatttttttgctacagctggaaaggatgactgcttggtgaaggtgtgg
taccataccagcagctggcagtctggagtgacatcacttaatagccctccagagaaagca
gcacagggagaagtgaactactcctttgtgtatctggcccatccacgcacagttacaggg
ttttcatggaggaaaacaagtaaatatatgccacggggatctgtatgtaatgtcctggtc
acctgctgcaaagatagtgtctgtcggctttgggcagagacgttgctgcccagtgacagc
ttattgtctggacatggccccagccaaagtaatgaccccgttacatcaacaagtggtctg
aaaaggcatgcccccaacaaacaccgtgtacagaatgctttggagctcaaccttaagcac
tccaggagagggaggaaatctcctgccatggctgctgacacaggctgtctacctcaccaa
caggacacccatgaggcccataggaacaactcaagcgtacatgcaaatgcactttgtcac
tttcacatagctgctagcatcaaccctgcaacagacattccactgcttccctccataaca
tccatgagccttgatgatgatggtgaagaccagaatgggccctttgtagtgcactggctg
aataacaaagagttacacttcactttgtccatggaagtgttcttacagcagctgcgaaag
agtcttgagcagcagcctcctgagaccagcggagaggagccctgtcagccagatgaagat
gcaatctacaaggatgaacagaaaggatctacaaagaagagcgaatatttgaatgctggc
gccttgcctttacctgctgccactattgatcacgagattgaaatactgcttgcggagtgg
aacaagaatgcagacatgatgtttagtattcatcccatggatggttctttattagtatgg
catgttgactggctcgatgagtaccagcctggcatgtttcgccaagttcaggtctcattc
gtctctagaatcccagtagcatttccaactggtgatgccaattccctaagcagaagcata
gtaatgtacgcctgcaccaagaacgtggaccttgctgttcagcagggcaaacagaagcct
cctggtatgatccgctcctcttcaatgttgatatcttttggcaacaataaatcttccagc
agtctaaaactcagtatcttcactcccaacgtccttatgatctcaaagcatgcagatgga
tctctgaaccagtgggccgtcagctttgcagaggaatctgccttttctacggtcctgagt
gtttctcacaaatctagatactgtggtcatcgttttcacctcaatgatttggcctgccac
tctgtgttacctttgctgctaacaacgtcccatcacaatgcactcaggaccccagaggtg
gacagtatgaatgataacaggggtcttgacaatacaatgccccgtgacccactttcaaag
aggcttaacagagtatctgtggatgcaacattccaggacccccatgcgatatacagtgag
ctgattctttggagagtggatccagttggaccactgtcattctccggaggagtttcagag
ctagccaggataaactcgctgcatgtttctgccttctccaatgtggcctggcttcctaca
ttgatccctagcgattgtttaggggcttatggtaactccccatctgcctgctttgttgca
agtgatggacgttcactgaggttataccaggctgtcattgaggccaaaacgctgttaagt
gagctctctaacccagacatttcaaaatatgttagtgaggttttcaacatcgtaagtcaa
caatcaactgcaaggccaggatgcataatagaacttgatgctatcaccgctcttcatggg
agagaaacgcagctcctccatgtctttgaagaagactttatcttgggtaaaaagatgaaa
ggagatgggattcaagaaactgaggaaatcgcatcgtctgaaacaggttcccagaaggga
ttctctcagaagttctacttggttgttattgagtacactcagagtggatgctctttacta
cacatgtggcacctgcacctgaagtcagtccagatcactgaagatgaccagcatgacaaa
actgagccgcaatctctcctgtccccacaagatggccagaatagcttttctcccgaaaag
tcctcttctcccctctctcaaaagtacaaggcctgcaggactaacttacatagtgccagc
aggctaactctcatctcagaaagagtttacagtcaacaaatgaagctgccagatagagtg
gaaattattcgagctacaccttcagcagggcacctgagttcctgttccatacatccaaca
ggccttgctccctatcttttggccacttcttgttctgatggaaaagttcgcttctggagg
tgcagagttgaccctgagtccttattctccaaagtagaggacagtggacggtgcagctat
acgtacatttgggaagagtggccactgctgattgaggatggttttctaaacagtagtaca
gtaagtgtgatgggaagaccaattgaggtcagctgttgcaacacaagccgcatagcagtg
gcttacaaacagacatcctctcaatactgtgggaaatactttacaatgcacgtgggtatt
tttgaatgtgaatctactggtgggtcacagtggatccttgaacagacacttaaccttgat
gaaccaagcacaatgttggaccccagaataagcattgatcgtaatttaacagtttataac
aaacaagatgtgtatttgtcaagtgacatccatgtaatgcccagtgccaagcatctgatt
tacttagactgggtttcaagagaagatgggtcacacattttaacagtggggattggctcc
aaactcctgttgtatggacagctctctggaaaaattccagagaaaggcagtaaagaaggg
cctgcagcttcagctttgcctatgtgggagggagcaaaagatcattcttactccagattt
gtacttcttcggtctgtagatcttgttgcctcatttgagggatctcttcccttgcctgtt
tctctgtcatgggtgcgagacggtatccttgtggttggtatggactgtgaaatgcacgtt
tattctcagtggcaaccacctgccaaatcagagctaacaactgcagagactgactgtggt
agcaccacgtcattaataacttcaataagacaaggtcatgccaatggagtaaaccaaaag
cctgccaagaagactctgacaagatcaatgacaagccttgctcaaaagctaagtggaatg
aagaccatgtacgatcttcctgttgagatggaagacaatggcctttttgaagcagcccat
gacctgttccccacattaccacagtaccaccctgttcagctgatggagctgatggacttg
ggcaaggttcgtagggccaaggccatcctctctcacttggtcaagtgcattgcaggggaa
gtagtggctctaaaggacaacagcacaaatcatgaacggcgcctccggtctctgtcaatc
agtgccagcggcagtacagccagggaccccaaaacatttagcaaaacagaaaactcggat
tacacagagattgactctattcctcccctcccactttatgcactgctagcagcagatgag
gatacttctcataaggtaatagataagtccacaaactccatcatgaacaaggaaaaccgt
gaagcccaaggtgatgattatgatgagctgttccagactcctagtctgggcactgatgac
tttggactcctggatactgatgatgaagaagatactaaaccaaaggtcattgacctttcc
cagtacagccccacctactttggcccagagcatgctcaagttctctccagtcatctcttg
cattctagtctacctggacttacccgaatggagcagatgtctttaatggctttggctgat
acaattgcaaccaccagtactgatgttggagaaagcagacataaaagtacaggtggcgag
actcttgatgaatgtggactaaagttcattttagccatgcggcttcatacctttcttcta
acatctctgccccctgcccatcgatcccagcttcttcaccaaggcttatctacttgccat
ttttcctgggcctttcattctgaggcagaggaggagctgctcaacatgctgcctgcaatg
cagaagggaaaccctacttggtcagagctgagagctatgggagtaggctggtgggtacga
aataccaacacactgcgaagatgcatagaaaaggtagcaaaagcagcattccagagaaat
aatgatcccttggatgcagctatttattatctcgctatgaagaagaaagctgtggtttgg
ggtctttacaggtctcagagggactcaaagatgactccatttttcaacaacaacttcagt
gaagacaggtggaggaaggcagcactaaagaatgcctttgcactgttgggaaagcagcgc
tttgagcactctgcagctttcttccttctggctggttccttaaacgatgcagttgaggtt
tgccttgagaaaatgaatgatattcagctggctctggtgatatcaaggttgtatgagtct
gaatttgaggtgtcgtccacatacaagaatatactgcagaaacggatcttggggtatgat
tctcatgagagaacattcaccctctcccagatgcaccaggacccttttttccgcagcatg
gcttactggatactggaggattatagcaaggctcttgatactctattggagcaacctgta
agagaggaagatgatgcaggacacactggtgttggtaccatgtcctactcttgtaacccc
atggtgttcaacttttacaattacttacggacccatcctcttctactgcgccgccatttt
gcttcttcagaaaagccttccaccaagatggggctaactgttgaaaacagctttgcagat
acaatcaacttggttgagaggaggttgttctttacagccgcacatgctcactttaaagct
ggatgccctatgctggcactagaggtcttgtctaagatgccaaaggtggtcaagaaatct
aagccgctgctgagtaaagaaagttccagcctctctgagggcaccaaagactctttgctc
tcaccagaaacaaaacaggaaaaagactctgattgtgattggtctcagacagtggtaaat
ggttttggattggtttctcattgcttgacaaacggccagtcagaatctgttctcagtttg
gattggagccagtcttctttgattgttcaggatgaagctttggatttaaattgggacagt
gataaagaacatgagactgatgatgaggaatctggcttgtccatgaaagacataaaaact
aaaaataacaacataatcatcaaaggggaaccggacaatagttctgcctacacagattct
cgcacagctggtgaggttgacgttataaccccctcagaagacacgatagctgcccagttg
aaattcagtgcatgtcttaagatcctaactacagaactccgaacgttatcaactggctat
gaggttgatggtggtaagcttaggtaccaactataccactggttagagagggaggttgtg
gccttgcaaaaggcttgtgattacaaccctgatttggaggatcttgaagaagggatagct
ggaaatgctgatgaaactgtcacaggacagtcagcagaggatcttgttcaccaacagaga
tccatacagcaaaaggattatcttcaaaaaaggagactgtggcttcttaagaaccagcct
ctctttaggatgtttctcagctactgcagtctccatgggtctcacggcggagggcttgga
tcagtcagaatggaattaattctgcttttacaagagtcccagcaggaaagctcaacacaa
actgcccttagccctgtaccacaccagacatctatacctctactattagcatgtactgcc
agtgcaaaaacagttgttgccaatcctgtagtatacctgaccaacctcgctcatgacata
ctacatacgataatagacctggactccccaccacatccagacagtaaaaataacaaggtc
tatgtaatgcacaccttagcagcatcactttctgcctgtatctaccagtgtctttgtaat
agtcacagctacagtgcctcacatgcaaaccagttcacaggaatcatctaccagagcttt
ctgctgacacatcagcatcctgtgagaacaatgagtttggatgagaccgtaacacccaat
acatccccagcccaatggccaggtattgtagccctgatacgtcttctaaattcttctgga
aaagaagaccagcctggattaactgttttgctttgtgagattttaacagcagtttttctg
agtctctttgtacatgggcttgcaacacattccagcaatgagctctttcgcattgtagcc
catccactgaacagcaagatgtgggctgcagtgtttggaggtggagcccggattcctgtg
aaggaacagagcccgaaaaagcctgccacaggaagacccttttctatccctagccctcat
caggtagtagtgttctccatggaatgtgtggggttttctaaatcccttacagccatcagt
acccatagaccaacaagtcccgcagtcactactgttaatgatgaatcggagaagcaccac
aagcgtttcaagctcttgtcaacaaaaggggcaagcagagaaagtctacagagcccgacc
tcgccagtcgtgaaccagaaaatgcctgttttcagagagaaattcattccgccggaactt
agtatctgggattacttcatagcaaagccctttcttccaccatcggaaagcagggtggag
tatgactctgaggagagccaaggtagtgacgacgaagatgatgatgatgaagaagaagat
gtttatgtttcagaaacccaacttcaagaacattccaatcccaactcatatagctggtca
cttatgcgtttggccatggtgcaaatggttctttacaacttgaagactttctatcctata
gcaggacatgatctttcagaactgccagttggctccccactttgccattcaattctgaag
acactgcagaggtgggagcaagtgcttcttaagaggctggagatttttggtggcccaccc
tccaaattcatctcctcacacactcttgaagatgcagtatcacctggccctgccatcctc
cgccacaaagcactgttggagcccactaacactcctttcaagtcaaagcaacgctctgca
ctcacagtgaaaaggctttggcaatacctggtgaagcaggacgaggtgcaggagaccttc
attcgaaatatattcaccaagaaaaggggtcaaaatgagttgatagaggaccacaatgaa
aatgccaaaaatactatgatggaggaacctaacatcaataagatagaagcagatcttgga
tatcctggtggaaaggcaagaattatccataaagagtcagacatcattacagcatttgct
attaataaggctaaccgcaattgcatagcaatagcttccactcatgacattcaggagctg
gacgtgtctgcaatcctcgcaactcagatattaacgtgggtcgacgatgaggtagaattg
gaaaataaaggcagtgaggatttcttgatgattcatgcacgtgatgatctcagctgtatc
caaggtactaccccatatacacacagcagtcctggaacacccattaatatgccctggctt
ggcggcatgcagactggcagaggagcttctgtgttgatcaaaaggaatataaacaatgca
agaaggatggcctctcatccaacattaccatactatctcacaggtgcacaagatggcagt
gttcggatgtttgagtggggtcattctcagcagattatttgctttcgacctccaggaaat
tcaagggtcacaaggatacggtttaattatcagggtaacaagtttggcattgttgatgct
gatggatgtttgagcttttggcagaccaacacaataggaagcacaccaaaaccatatctg
accttgcagtgtcataacaaaacagccaatgactttgtttttgtgggttcatcctccttg
atagcaaccgcaggacaatctagtgataacagaaatgtatgtctgtgggatactctggtg
acaccagccaacagtctggtccacgcatttatctgccacgatagtggagccacagtgcta
acctatgctccaaagcaccagttgttaatctctggtggcagaaagggtttcgtctgtgtg
tttgagctccatcagaggcagcagaggcagacttttcaggcgcatgactcccccgttaaa
gctgttgctgtagatccaacagaggagtactttattactggttctgcagaggggagcatg
aaggtatggagcttatccacgcacagtctgattcacactttcatcaatgagcatgctcgg
cagtccatctttagaaacataggaactggggtaatgcagatagaggctggtcttgcaaac
cacatcttctcttgcggagcagacggcacagtgaagatgaggattctgccagactgcttt
agcacaatgaatggtgtgaaaaatgatgtgaaatgtgtaatctaa
DBGET
integrated database retrieval system
