Polyodon spathula (Mississippi paddlefish): 121315379
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Entry
121315379 CDS
T07273
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121315379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121315379
03021 Transcription machinery [BR:
pspa03021
]
121315379
03036 Chromosome and associated proteins [BR:
pspa03036
]
121315379
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
ARID
121315379
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121315379
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121315379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
DUF4573
ARID
Motif
Other DBs
NCBI-GeneID:
121315379
NCBI-ProteinID:
XP_041105346
LinkDB
All DBs
Position
5:complement(656209..845411)
Genome browser
AA seq
1980 aa
AA seq
DB search
MAMKRTQLYGMSSNPYSQQQQGGSYPGQPYASPPPHRYPMGMQSRNQEGMGGMQYPQQQQ
MPPQYSQQGLQSYYDPPQQPAARAQPAHTQQKLPPQQDMSGSIDDLTTGTEAALSSAVST
SGSTSSQGEQSNPAQSPFSPHASPHLSSMRSGPSPSPVGSPVGSNQSRSGPISPASVPGN
YPRPPNYGGAPSANYSGAGPGMSNSLGMNASSPMHGQGPGQPCGSMPLGRGPASGMASRP
YPGSMSNMAPNSPSMPQQTVQGMGPPLPSINRKAQEAAAAVMQAAASSAHSRLAYVKSPV
YPSQAGSGGRAVFMQQHPNYSQAPMVHQPDQYRQSSYPSMNQSGMMGSNSPYSQPMNNNS
GVMNPQGPAYNLGSSSAGLMGLAGDMMNAADPKLPLKPESKEDSIPPLETKVSSLQHVDS
IPPLETKTKVSSLQHVDSIPPLETKTKVSSLQHVDSIPPLETKTKVSSLQHVDSIPPLET
KTKVSSLQHVDSIPPLETKTKVSSLQHVDSIPPLETKTKVSSLQHVDSIPPLETKTKVSS
LQHVDSIPPLETKTKVSSLQHVDSIPPLETKTKVSSLQHVDSIPPLEIKTKVSSLQHVDS
IPPLETKTKLSSLQHVDSIPPLETKTKLSSLQHVDSIPPLETKTKVSSLQHVDSIPPLEI
KTKVSSLQHVDSIPPLEIKTKDSPSSQGISQPPTPGSLPVPSPLSPCTASISSFHGDESD
CISSPGWPKTPASPKSISSTTTNEKISKLYEMGSEPERGVWVERYLGFMEERGSAVLNLP
AVGKKPLDLCRLYMAVKEIGGLAQVNKSKKWRELSSILHMGTSSSAASSLKKHYIQYLFA
FECKVERGEEPPPGSFSVGHNKKQARIQPPSPANSGSLQGPQTPQSTGSSSMTEAPEDLQ
PPAPVSSAHGQMPPLQGNRSSAVSVQDPFSEISDPAFQKHSTPYQPGVNTPEGVMRMHFE
SSKGPLGGMRKVPGNSEPFMSPAQLSSSGMQDMYSRSPSAGMSSLGMGQRQQYPYGPRYD
RRPDHGMSPEGSLGPPGGQSNMVPSNSDPSMYSPHGHPGQQRHDPYGQQYSGQGPPSSQP
PYGSHQPAMFPQQQGYKRPMEGMYSPPAKRHEGEIYSMQCGGQHPDMYSQYGSSFSGPER
RPIQGQYPYPYSRDRLQIAGQPPPQQHGMLSSALQHTSNTGAGPQQNTWPSRTALPYPYP
NRQGPGASSQGPIYPGMGREDESVVPDQRLNPESQWPSHVNQRQSPYLPPSSSSLASMTS
RPPQPSYQTPPSLPNHISGAPSPASFQRSLESRVSPSKSPFLPAMKMQKVGQPAPASHVS
GPVVQPPISRREIGFPPGSAEATQPVLKPRRRITSKDTATPEAWRVMMSLKSGLLAESTW
ALDTINILLYDDSTVASFNLLQLPGFLELMVEYFRKCLIEMFGILKEYEIGAPGQKALLE
PVSIKKENIQSKASDCGTEEVKTDCKEEQAKELDEPEIDKEEVEAEAEEQEEKRGVDTEE
TLDKPEEKPKQASKFDKLPLELVDAGDDFVVERSEQLKHVQEFSSGLLHWKIGGGDSTEH
IQTHFESRVEVVMRGWHGDSCANPDKEHKKNKQVEMEETVSEDQVENSIMATIDDVLSAR
PGALTDGNLFPTSTHPDQLALRIRQAKSHRKIKLLEDEHKTRDELPLSTIASWQDSLTKR
CICVSNIVRSLSFVPGNDAEMSKHSGLVLILGKMVLLHHEHPERKRAPQTYETGEAQDKG
LACSKDEWWWDCLAVLREDTLVTLANIAGHLDLSLYPQSICLPILDGLLHWMVCPSAEAQ
DPFPLAEPSSALTPQRLALETLCKLSVQDSNVDLILATAPFSRLEKLYATLLRFVGDRKN
QVYREMSVAILSNLAQGDTLASRAIAVQKGSIGNLLSFLEDGVTLAQYQQSQHNHLHMEP
PSINMMCRAAKALLAMARVEENRSEFVLFEGRLLDISISSVLNSTVACIICEVLFQIGRL
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgaagcgaacgcaactgtatgggatgagcagcaacccctattcacagcagcag
cagggcgggtcctatccaggccagccatacgcatcccctcctccccacagatacccaatg
ggaatgcagagcaggaaccaggaaggaatgggcggaatgcaatacccacaacaacagcag
atgcctcctcagtatagtcagcaaggcctgcaatcgtactacgaccccccgcagcagcca
gcggcacgggcacagcctgcacacacacagcagaagctcccgccccagcaggacatgtct
ggttccatcgatgacttgaccacaggaaccgaagccgctctgagctctgctgtcagtacc
tcgggctctacaagcagtcagggggagcagagcaacccagcgcagtctcccttctctccc
catgcctctcctcacctctccagcatgcgcagcggcccctctccctccccagtgggctct
cccgtcgggagcaaccagtccaggtctggtcccatctctcctgcaagtgttccaggtaac
tatccgaggccgccaaattatggaggggcaccaagtgccaactacagtggagcaggtcct
ggcatgagcaacagcttgggtatgaacgccagcagcccgatgcacgggcagggtcctggg
cagccctgtggctccatgcccctgggccgggggccagcgtcaggaatggccagcagaccg
taccctggaagcatgagcaacatggcccccaactctcccagcatgcctcagcagactgtc
caggggatgggtccccctctgccgtccatcaaccgcaaggctcaggaggccgctgctgcc
gtcatgcaagcagctgccagctccgcccacagcaggctggcatatgttaagtcacctgtc
taccccagccaggctgggtctgggggacgggccgtgttcatgcaacaacacccaaactac
agtcaggctcccatggtgcaccagccagaccagtacaggcaaagcagctaccccagtatg
aatcaaagtggcatgatgggctcaaactccccctatagccagcccatgaacaacaactcg
ggggtgatgaacccacaaggccctgcctacaacctgggcagcagctctgcaggtctcatg
ggtctggcaggggacatgatgaatgctgctgacccaaagctgccgctgaaaccagagagt
aaagaggacagtatccctccactggagaccaaggtatcctcccttcagcatgtggacagc
atccctccactggagaccaagaccaaggtatcctcccttcagcatgtggacagcatccct
ccactggagaccaagaccaaggtttcctctcttcagcacgtggacagcatccctccactg
gagaccaagaccaaggtatcttcccttcagcatgtggacagcatccctccactggagacc
aagaccaaggtatcctctcttcagcatgtggacagcatccctccactggagaccaagacc
aaggtatcctctcttcagcatgtggacagcatccctccactggaaaccaagaccaaggta
tcctcccttcagcatgtggacagcatccctccactggagaccaagaccaaggtatcctcc
cttcagcatgtggacagcatccctccactggagaccaagaccaaggtatcctcccttcag
catgtggacagcatccctccactggagaccaagaccaaggtatcctcccttcagcatgtg
gacagcatccctccactggagatcaagaccaaggtatcctcccttcagcatgtggacagc
atccctccactggaaaccaagaccaagttatcctctcttcagcatgtggacagcatccct
ccactggagaccaagaccaagttatcctctcttcagcatgtggacagcatccctccactg
gagaccaagaccaaggtatcctcccttcagcatgtggatagcatccctccactggagatc
aagaccaaggtatcctcccttcagcatgtggacagcatccctccactggagatcaagacc
aaggatagccccagctctcagggtatttctcagccccctaccccaggcagcctgccagtc
ccttcccccctgtccccctgcaccgctagcatctcctcatttcatggagatgaaagtgat
tgcattagcagcccgggctggccaaagactccagcaagccctaagtccatctcttccacc
accactaacgagaagatcagcaagctgtatgagatgggtagcgagcccgagcgcggggtg
tgggtggagcgctacctgggtttcatggaggagaggggctcggctgtccttaacctgcca
gctgtggggaagaagcccctggacctctgccgactctacatggcggttaaggaaatcggt
ggcctggctcaggttaataaaagtaagaaatggcgagagctgtccagcatcctccacatg
ggcacctcgagcagcgcggccagctccctgaagaagcactacatccagtacctgtttgcc
tttgagtgtaaagtggaacgcggagaggagccgccacctggaagcttctctgtgggacac
aataagaagcaagccaggatccagccaccatctcctgccaattcaggctccttgcaaggc
ccccagaccccacagtcaactggcagcagttccatgactgaagctccagaagacctccag
cctccagccccagtctcctcagcacatgggcagatgccacccctgcagggtaacagaagc
agtgcggtcagcgtgcaggaccccttttcagagatcagtgaccctgcattccagaagcac
agcactccataccagccgggggtgaacacgccggagggggtgatgaggatgcactttgaa
tccagtaagggtcctcttggtgggatgagaaaagtgcctggaaacagtgagcccttcatg
agtccagcacagctgtccagcagcgggatgcaggacatgtacagtcggtcaccctcagcc
gggatgtccagtctggggatggggcagaggcagcagtacccctatgggccaaggtatgac
aggagaccagatcacgggatgagcccagaaggtagtttggggccccctggtggtcagagt
aacatggtgccttcaaacagtgaccccagcatgtactctccacacggacaccctggccag
cagagacatgacccctacgggcagcaatactcaggacagggtcccccctcatcacagcct
ccatatgggtcacatcagcctgccatgttccctcagcaacagggctacaagcgtcccatg
gagggcatgtacagccccccagccaagcgacatgaaggggaaatctacagcatgcagtgt
ggcggccagcaccccgacatgtacagccagtatggcagcagcttctctgggcccgagcgg
cggcccattcagggacagtatccctacccttacagccgggacaggctgcagatagctggg
caaccccccccacagcagcacgggatgctgagcagcgccctccagcacacctccaacact
ggcgcgggcccccagcaaaacacgtggccctccaggactgctctaccatatccctacccc
aacagacaaggacccggggcatcctcccagggacccatctaccctggtatgggcagggag
gatgagagcgtggtccctgaccagaggctaaacccagagagccaatggccaagtcacgtc
aaccagcggcagtccccctacctgcccccttcctccagctccctggcctccatgacctca
cggcctccccagccctcctatcagactcctccctctttgccaaaccatatctccggggcg
cccagccctgcctccttccagcgctccctggagtcccgcgtgtcccccagcaagtctccc
tttctaccagccatgaagatgcagaaggtgggccaacccgcccccgcgtcccacgtcagc
ggccccgtggttcagccaccaatcagcagacgtgagattggctttccccctggctctgcg
gaggcaacgcagcctgtcctgaagccacggcgcaggatcacctccaaggacacggcaaca
ccagaggcatggcgtgtgatgatgtctctaaaatccggtctcctggctgaaagcacatgg
gctctggataccattaacatccttctgtacgatgacagcacggtcgcctcgttcaacctc
ctgcagttacctggattcttggaactcatggttgagtatttcagaaaatgcctgattgaa
atgttcggcatcctaaaggaatatgaaattggtgctccaggccagaaggctcttcttgaa
ccagtttccattaaaaaggagaacattcagtccaaagcgagtgattgcgggactgaggag
gttaaaacagactgcaaggaggagcaggctaaggaactggatgaacctgagattgacaag
gaggaggtggaggcagaggcagaggaacaggaagagaagaggggggtcgacactgaagag
accttggacaagccagaagagaaaccaaaacaagccagcaagttcgacaagctgcccctg
gagctggtggatgcaggggatgactttgtggtggaacgctcagagcagctgaaacacgtc
caggagttcagcagcgggctcctccattggaagatcgggggaggagactccacggaacac
atccagacccactttgagagcagggtggaggtggtgatgagggggtggcatggggactcc
tgtgctaacccagacaaagagcacaagaaaaacaagcaagtggaaatggaggaaacagtg
tcagaagatcaagtggagaacagcatcatggcaaccatcgatgatgtgctgagtgcccgt
cctggagctctcacggacggcaatctgtttcccacctccacacaccctgaccagctggcc
ttacgcatccgtcaagccaagagccatagaaaaatcaagcttctggaagatgagcacaag
actcgagacgagctgcctctgtccaccattgccagctggcaggactctctcaccaagcgc
tgcatctgcgtgtccaatattgtgcgcagcttgtcctttgtgcctggaaatgatgcagag
atgtcaaaacactcggggctggtcctgatcctggggaagatggtccttctgcaccatgag
catcctgagaggaagcgagccccccagacctacgagacgggagaggcacaggacaaggga
ttggcgtgcagcaaggacgagtggtggtgggactgcctggcagtcctgcgggaggacacc
ttggtcaccttggctaacattgcggggcacctggacctctctctttacccacagagcatt
tgtctgcccatcctggatggtctactgcactggatggtctgcccatcagccgaggcccag
gaccccttccccctggcagagccgagctcagccctcaccccccagagacttgcgctggag
accctgtgcaagcttagcgtccaggacagcaatgtggacctcatcctggcgaccgcgccc
ttcagccggctggagaagctgtatgccaccttgcttcgtttcgtgggagaccgcaagaac
caggtctaccgggaaatgtcagtagccattttatctaaccttgcccaaggggacacattg
gcatcacgggccatagctgtgcagaaaggaagcattgggaacttattaagcttcctggag
gatggagtcaccctggcacagtaccaacagagccagcacaaccacctccacatggagccg
cccagcatcaacatgatgtgcagggcagcaaaggctcttcttgccatggccagggtggag
gagaatcgctcagagtttgttttgtttgaaggacggctgcttgacatttccatatcctct
gtgctaaactccacagtggcctgcatcatttgtgaagtactctttcagattggacgctta
tga
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