Polyodon spathula (Mississippi paddlefish): 121315554
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Entry
121315554 CDS
T07273
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121315554 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121315554 (trim54)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121315554 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
UvrD_C
PAH_ZNF598
Prok-RING_4
CYP38_PsbQ-like
Motif
Other DBs
NCBI-GeneID:
121315554
NCBI-ProteinID:
XP_041105674
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All DBs
Position
5:11582800..11598741
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AA seq
363 aa
AA seq
DB search
MNFAVGYKPILGNSNTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTGSSGGRFRCPSCRHEVILDRHGVYGLQRNLLVENIIDIYKQESSRPIHTKL
EQQLMCEEHEEEKINIYCLTCETPTCSMCKVFGAHKDCEVAPLQNVYQRQKTELSDGIAM
LVAGNDRIQAMISQLEGICKTIEDNGQRQKQHLSEKFDALYSVLEERKKELLLCITREQD
EKLGHVRALSRQYGDYLEGASKLVETCIQSMEEQQMATFLQHAKELIKKMTDTAKSSNME
RTEPGYENMDHFVINVEDVSDMLRTIDFQQVSQGDDNEPVCEAQEEEEVAQQSTDEEKPK
TSN
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcagtaggctacaaaccaattctggggaactcgaacaccatggataacctg
gagaagcagctcatctgccccatctgcttggagatgttcaccaaacctgtggtgatcctg
ccctgccaacacaatctctgcaggaagtgtgccaacgacgttttccaggcttctaacccg
ctgtggcagtcgcgaggctccactactgggtcctcaggggggcgtttccgttgcccttcc
tgccgacatgaagtgatcctggaccggcacggtgtctacggactgcagaggaacctgctg
gttgaaaacatcatcgacatctacaaacaggagtcctccaggcccatccacaccaagtta
gagcagcagctgatgtgtgaggaacacgaggaagagaagattaacatctactgcctgacc
tgtgagacgcccacctgctccatgtgcaaggtgttcggagctcacaaagactgtgaagta
gctcctctacagaacgtttatcaacggcaaaagactgaattgagtgatggcattgctatg
ctggtggcggggaatgaccgaatccaggctatgatctcccaactggagggaatttgtaaa
actattgaggacaatgggcagcggcagaagcagcacctctctgagaagtttgacgccctc
tacagtgtgctagaggagaggaagaaggagctcctgctgtgtatcacccgggagcaggat
gagaagctgggccacgtcagggctctgagccggcagtacggggactatctggagggagca
tccaagctggtggagacatgcatccagtccatggaggagcagcagatggccactttccta
cagcatgctaaggaattgattaaaaagatgacagacactgccaaatcatcgaacatggag
aggactgagccagggtacgagaacatggaccatttcgtaatcaacgttgaagatgttagt
gacatgctgagaaccatagacttccaacaagtgtcacagggagatgacaatgaaccggta
tgtgaggctcaggaggaggaagaagtggcccagcaaagcacagatgaagaaaagccaaaa
acttcaaattga
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