Polyodon spathula (Mississippi paddlefish): 121315673
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Entry
121315673 CDS
T07273
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121315673 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121315673 (zgc:152968)
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
RNases
121315673 (zgc:152968)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
KIX_2
Motif
Other DBs
NCBI-GeneID:
121315673
NCBI-ProteinID:
XP_041105943
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All DBs
Position
1:14781018..14790596
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AA seq
1116 aa
AA seq
DB search
MLSEQDLSLLELHRINKAIETVKCEVEQEQKKLSHYKTLHEKGDTDPYSATATSVELKKA
HDCGNKNNATCPSRTHKLEGASAYLVTSSKYVVDKSRPATDLEYDPLSNYSADLGNNNAK
QCEDPKRGIKRTMEDTYGRKSEPPNKVTRDCMAWQDDLEVEGSDEECDLVIDIPPLVTHF
KKPRASRRWKNNENQLEESDVVAKNLLQKTPDATSALVEMETTDTVDPVECLPVISGEEG
EGVLGDHSASSAVGLNQGSECKGELSEVKKEGGVTYLTGSKKVIFLERSKSEMEQVPVAA
SKPFEPLRVPVRCPTLDHAKVGTKLLQEQTDLSMLPKEKFKNKADPGMGEQLIKKKDQQK
MDRLCTKDMNQCLPSQQKSNVLPQAAPFVGVTVSPVQPKNQDQQKSTSKNMTQCLPSQQK
TTTLGVPKPDPLQGEFDFAVKTASPLRPKNQDQHTAEQKSSKKHVAHSSPSPQEPTVPDV
PKTAMVCDVAVNPSLGQSQNQDQIVMVESSSESDSSDMEMCLSDNDQMEECYRIFMEANE
IKPEEKERSSRPVQECIEIDRPDMEKKQSLLPGQKKRVAHVSKHNVRSSRQHVLVPFREP
TSQLANPTRIQQLQQQASILTAAVKGGQAFVAATTVPKKTTVIAPAAPAFPSTAQTVPVG
GMAVSSQSSNVQLILPEGTIIGAAAIAPATSAQQRTTYTPAKAIASRRKTNLVVEPSSKV
AHDVRQRYVNMFVEEFLKTSFTVQEAFEKALAEEKAVFERSTNKIKYLSIAVNSLKRLKN
QCSPSNSTDSSLQSSRGHTSGGGTLQAEKTNDSAGAAFYEQLKEYIMTDEMLKVNGFPLQ
HPDKPAAALFFGDVSKKSTAGSLKRICCRCGATYSVTSSGKHVRKEECNYHSGKVLKKKV
PGGLDTRYSCCEGAVGTPGCQVFQLHVHDGCKENLEGFVKTFSKSFLSNGNAGVFALACQ
MCYTTQGLELARVTVVNPSLQVVYDTFVKPDNEVIDYNTRFSGVTEDDLKRTNPSIRDVQ
AVLLNLFSAETILIGHCFENDLFALKLFHNTVIDTSIVFPHRLGLPNKRTLRKLMADYLR
RIIQENVGGHDSSEDAAACMELMLWKVKEDAKVKRW
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgctctctgaacaggatctcagccttttggagcttcataggataaacaaagcaattgag
acagtcaagtgtgaggttgagcaagagcaaaagaaactgtcccactacaagaccctacat
gaaaaaggggatacagatccatactctgccacagcaacatcagtagaattgaagaaagca
catgactgtggcaacaaaaataatgcaacatgccccagtcgcacacacaaattggaggga
gcttcagcctacttggtcaccagtagtaaatatgtggtggataaatctagaccagcaact
gatttggaatatgatccattgtccaactattctgcggatctggggaacaacaatgcaaag
cagtgtgaagatccaaagagagggataaagagaaccatggaggatacgtatggacgaaag
tcagaaccacctaataaagtaacaagggattgcatggcatggcaggatgaccttgaggtc
gagggatctgatgaggaatgtgaccttgtcattgatattccacctttggtaactcatttc
aagaaacccagagcctctaggagatggaagaataatgaaaaccagcttgaggaatcagat
gtagttgccaaaaatcttctgcaaaaaacacctgatgcaacatcagcacttgtggaaatg
gagacaacggatacagttgatcctgtcgagtgcctcccagtgatctctggggaagagggt
gagggagtgcttggagatcacagtgcaagttctgctgtaggccttaaccagggcagtgaa
tgtaaaggagaattgagtgaagtaaagaaggaaggaggtgttacatatttaactggaagc
aaaaaggttatatttttagagagatccaagagtgaaatggaacaagtccctgttgctgcc
tcaaaaccatttgaacctctgcgagttcctgtaagatgccctacattggaccatgccaag
gttggcacgaaattgctacaagaacaaactgatctatccatgctaccaaaggaaaagttt
aaaaataaagctgatccaggaatgggagagcaattgattaaaaagaaagaccagcagaaa
atggacagactctgcaccaaagatatgaaccagtgtctgccttctcaacaaaagtccaat
gtacttccacaggcagcaccttttgtgggggtgactgtgtcaccagtgcaacctaaaaac
caagaccagcaaaaatccacttcaaaaaacatgacccaatgtctgccttctcaacaaaaa
acaaccacactgggtgtaccaaaaccagatccccttcaaggagaatttgactttgctgtg
aagactgcatctcctctgcgacctaaaaatcaagatcagcatacagctgagcaaaagtcc
agtaaaaaacacgtggctcacagttcaccatctccacaagagccaaccgttccagatgtg
ccaaagacagcaatggtttgtgacgttgctgtaaatccatctttggggcaatcccagaat
caagatcagatcgttatggtggaatcttcatctgaatcggatagttcagatatggaaatg
tgtctatctgacaatgaccaaatggaagaatgttaccggatttttatggaagccaatgag
atcaaaccagaagaaaaggaaaggagcagcagaccagtgcaggaatgtattgaaatagac
agaccagacatggagaaaaaacaaagtctcctcccaggacagaagaagagagttgcacat
gtgtctaagcataatgtaaggtcaagcagacagcatgtcctagtgccattcagggagcca
acttcacagcttgcaaatcccactcgaatccagcagttgcagcagcaggcttctatatta
actgctgctgtcaaaggtggccaggcttttgttgctgccactactgtgccgaagaaaacc
actgtgatagcccctgctgctccagcatttcccagcactgcgcaaactgtaccagttggt
ggaatggcagtttcttcacagagctcgaatgtacagttgattttaccagaggggactata
attggggctgcagcaatagctccagccacatctgcacaacagcggacaacttatactcct
gccaaggcaatagccagtcgcagaaaaacaaatttggttgtagaacccagctcaaaagtt
gcacatgatgtgaggcagcgttacgtcaacatgtttgttgaagaatttttgaaaacatcc
ttcactgtacaggaggcatttgaaaaggcgttggctgaagaaaaggccgtatttgagcgc
agtaccaacaagataaagtacctgagtatagctgtaaactctcttaagaggctgaagaac
cagtgcagcccttctaacagcacagactccagtttgcagagttcaagaggtcacacctct
ggtggtggaacattgcaggctgaaaagacgaacgattcagctggggctgcattctatgag
cagctgaaggaatacattatgactgatgagatgttaaaagtgaatggcttccctcttcag
catcctgataaaccagcagctgctttgttctttggtgatgtctctaagaaaagcaccgca
ggctcattgaagaggatctgttgtcgatgtggagcaacatattctgtgacgtcgtcgggg
aaacatgttcggaaggaggagtgcaactaccactctgggaaagtgctgaagaaaaaagtt
cctggtggcttagatactcgctatagttgttgtgaaggtgcagtaggaacacctggatgt
caagttttccagcttcatgtacatgatggctgtaaagagaaccttgaaggttttgtaaag
acattttcaaagtccttcctcagtaatgggaacgctggtgtgtttgctttggcctgtcag
atgtgctatactactcaaggtctggaactcgcaagggttactgtggtaaaccccagtcta
caggttgtctacgacacttttgttaaaccagacaatgaagttattgattataacaccagg
ttctcgggagtcactgaagatgacctgaaacggacaaacccctcaatccgtgatgttcag
gcagtgctgcttaacctgttcagtgctgaaactattttaatcggtcactgctttgaaaat
gatctgtttgcacttaagctctttcacaacactgtcattgacacgtctattgtttttccg
caccgtttgggtttgccaaacaagcgaacacttaggaagttaatggcggactatttgagg
cggattattcaagagaacgtgggcggtcatgactccagtgaagatgctgctgcttgtatg
gagctaatgctgtggaaagtaaaggaggatgccaaagtgaaaagatggtga
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