Polyodon spathula (Mississippi paddlefish): 121315693
Help
Entry
121315693 CDS
T07273
Name
(RefSeq) serum response factor-like isoform X1
KO
K04378
serum response factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121315693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121315693
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
121315693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
121315693
NCBI-ProteinID:
XP_041105942
LinkDB
All DBs
Position
5:complement(20031741..20068788)
Genome browser
AA seq
593 aa
AA seq
DB search
MLPSQAGTAPVGNGSGSGKGNAGHGVGVIGSGVATSLSRAGLVGVSGGVGRSGNGPVMLG
GNGAAGGSRGAQRSGNGAGVAGLQGAGAGGLGSMGSVVGGQGVSRFDPDRETSAIVFSGS
DNDSDSVDDDDLAVLGQGTIGRGVKRERAEVESSIMGQGAGTPAGGYSGVSGGVAGAKPG
KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF
ATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQRMSATGFEETDLTYQVSESDSSG
ETKDTLKPAFTVASLPGTSTCNPTAPTTTTMQVSSGASFPITNYLAPISASGNANSITSA
NGTVLKTAATSGGVMQLPSGFTFMSGTPLPPGTPTIPISQLQSHSLAIQGQPGQTITGAQ
GQQTVFRFPASVSLTGGTVTQQLQAIQVHSSTQHSTSTTDSGPESSQASSSSAVSLPATI
VTSSVPTTMAGHMMYPSPHTLMYTSTPALADGSLAVLNAFSQAPSAMQVSHGQVQEQGGV
PQVFLTGPPGTVQIPVSAVQLHPMVIGQQSSNSSHLTELQVVNLDAAHNSKSE
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgctacctagccaggctgggacggcaccagtagggaacgggtcaggatcgggcaaaggt
aacgcgggtcacggggtaggagtgattgggagcggggttgctaccagcctgtcaagagca
gggttagttggagtcagcggcggggttggtcgatcagggaacgggccagtgatgttgggg
ggcaacggggcagcagggggttctcgcggggcgcaaaggtctgggaacggggcaggagtg
gcaggattgcaaggagcaggagcgggggggctcgggagtatggggtcagtagtcgggggg
caaggagtaagcaggtttgaccccgaccgggaaacctcagccattgtgttcagcggctcg
gacaacgattcggactctgttgatgacgatgacctggcagtgttgggtcaggggaccatc
gggagaggggtgaagcgggagagagccgaggtagaatccagcataatggggcaaggagct
gggacgccagctggaggctacagcggcgtgtcaggtggggtggctggggcaaaacctggc
aaaaagactcgaggaagagtcaagattaaaatggagtttatcgacaacaaactgaggcga
tacacgactttcagcaaaaggaagactggcatcatgaaaaaggcgtacgagctctcaaca
ctgacgggcacacaggtgctactgctggtggcgagcgagactggccacgtgtacacattc
gccacgcgcaagctgcagcccatgatcaccagcgagacaggcaaggcgctgatccagaca
tgcctcaactcccccgactcgcctccccgctccgaccccaccacagaccagcgaatgagt
gccacgggcttcgaggagacagacctcacctaccaggtgtcagagtctgacagcagcggg
gagaccaaggacaccctaaagcctgccttcacggtggccagcttgcctggcacctccacc
tgtaaccccacagcgcccaccaccaccaccatgcaggtgagcagcggagcctccttcccc
attaccaactacctggcacctatttctgccagtggcaacgccaacagcatcaccagtgcc
aacggaacggtgctcaaaacggcagccacctcaggtggggtcatgcagctccccagcggc
ttcacctttatgtcaggcactccgctcccccctggcacccccaccattcctatcagtcag
ttacagtcgcactcgctagccatacagggtcagccaggccagaccatcactggggctcaa
gggcagcagacagtcttccgcttcccagcgtccgtctcgctaacagggggcacagtgact
cagcagttacaagcaatccaggtccactcctcaacgcagcacagcaccagcaccactgat
agcgggcctgagagctcacaggcctcctccagctctgcagtcagtctcccagccacgatc
gtgacttcgtccgttcccacgacgatggcgggtcacatgatgtaccccagcccccacact
ttgatgtacacctccacacctgcgctggctgatggcagcctggccgtgctcaatgcattc
tctcaggccccctccgccatgcaggtctcccacgggcaggtgcaggagcaaggtggagtc
cctcaggtgttcctcacaggccctccaggaacggtacagatacccgtctcagctgtgcag
ttacatccaatggtcattgggcagcagtcgagtaacagcagtcatctgacggagctgcag
gttgtgaacctggatgctgcacacaactccaagagcgagtga
DBGET
integrated database retrieval system
