Polyodon spathula (Mississippi paddlefish): 121315709
Help
Entry
121315709 CDS
T07273
Name
(RefSeq) calpain-1 catalytic subunit-like isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04141
Protein processing in endoplasmic reticulum
pspa04210
Apoptosis
pspa04217
Necroptosis
pspa04218
Cellular senescence
pspa04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121315709
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121315709
04217 Necroptosis
121315709
04218 Cellular senescence
121315709
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121315709
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121315709
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
121315709
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C2: calpain family
121315709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
LAT
Motif
Other DBs
NCBI-GeneID:
121315709
NCBI-ProteinID:
XP_041105977
LinkDB
All DBs
Position
5:complement(20945983..20969392)
Genome browser
AA seq
732 aa
AA seq
DB search
MPEAPMSPVCVSQLSIINWGISGTYFSSMLQFGGISARIHKDRLKAEGMGTNERALKLFN
QDYEALKQECLESGTLFEDPHFPAQAPSLGFKELGAHSSKTRGVVWQRPTEFTDDPQFIV
GGATRTDICQGALGDCWLLAAIGSLTLNERLLHRVVPHGQSFQEDYAGIFHFQFWQFGEW
VDVVVDDRLPIKDGELVFVHSAEGNEFWSALIEKAYAKLNGSYEALSGGSTTEGFEDFTG
GVSEMYELRQAPKNLYKIIQKALERGSLLGCSIDITSAFDMESVTFKKLVKGHAYSVTGL
KEVGYRGRTERLIRIRNPWGQVEWTGAWSDSSSEWNEVDPSHKEELQLRMEDGEFWMAFS
EFLRQFSRLEICNLTPDALSEDSLSFWNTVKYDGSWRRGSSAGGCRNHPNTFWINPQFKI
TLLEEDDDPDDNELACSFLVALMQKDRRQYRRHGQDMHTIGFAIYEVPDEYKGCQNVHLK
KDFFLKHSSCARSETFINLREVSSRLHLPPGEYIIVPSTFDPNKEADFVLRVFTEKQSDT
QELDDEIGADLEDEEEISEDDVDDSFKVMFQQLAGEDMEISVHELRTILNRVVSRHKDLR
TDGFSMESCRSMVNLLDKDGSARLGLMEFQILWNKIRKWLTIFRQYDLDRSGTMSAYEMR
LALESAGFKLNNKLNQVLVARYADNEMIDFDNFICCLVKLEVMFRSFQQLDRDESGTVEL
NLTEWLLMTLCG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgccagaggcccccatgtctcctgtttgtgtctcccagttaagcattataaactggggc
atttcggggacctatttcagcagcatgctccagtttggggggatctcggctcgcatacac
aaggacaggctgaaggcagaaggcatgggcaccaacgagagggctctgaaacttttcaac
caggactatgaagcccttaaacaggagtgtctggagagcggcaccctgtttgaggacccc
cacttcccagcccaagctccctccctggggttcaaggagctgggggcacattcttccaaa
actcggggggtggtgtggcagagacccacggagttcacagatgatccccagttcattgtt
ggaggtgctacaaggactgacatctgccagggggcccttggtgactgctggctcctggct
gccatcggctccctcactctcaatgagaggctgctgcatcgagttgttcctcatgggcag
tccttccaggaagactacgctggaatattccactttcagttctggcagtttggagagtgg
gtggatgttgttgttgatgacaggctgcccattaaggacggggagctggtctttgtccac
tctgcagaaggaaacgagttctggagcgccttgattgagaaagcttatgccaagttgaac
ggctcgtatgaggcgctctctggcggcagcacgaccgaggggtttgaggacttcactggg
ggcgtgtcagagatgtacgagctgcgccaggctcccaagaacctgtacaaaatcatccag
aaggctctggagaggggttctctgctcggctgctccatcgatatcacaagtgcctttgac
atggaatcagtgacgtttaagaagctggtaaaaggtcatgcgtactctgtgactggactg
aaagaggtaggttaccgggggcgcacagagcgtctgatccgcatcaggaacccctggggt
caggtggagtggactggagcctggagcgacagttcctcagagtggaatgaagtcgatcct
tctcataaggaggagcttcaattaagaatggaagatggggagttctggatggccttcagt
gagttcctgaggcagttctctcgactggagatctgtaacctgacccccgacgccctgagt
gaggacagcctgagcttctggaacacagtcaagtacgacggcagctggcggcgcgggagc
tccgcgggaggatgcaggaaccacccgaacacgttctggatcaacccgcagtttaagatc
accctgctggaggaggatgatgaccccgatgacaacgaactcgcctgcagcttcctggtt
gccttgatgcagaaggacaggcggcagtaccggcggcacggccaggacatgcacaccatt
ggctttgccatttacgaggttccagatgagtacaagggttgccagaacgtgcacctgaag
aaggatttcttcctgaagcactcctcgtgtgctcgctctgagaccttcattaacctgcgg
gaggtgagctctcgactgcacctgcctccgggggagtacatcatcgtcccctccaccttc
gatcccaacaaggaggccgacttcgtcctgagagtcttcacagagaagcagtcagacacc
caagagctagatgatgaaatcggtgctgatctagaagatgaggaggagatctcagaagat
gatgtcgatgattccttcaaggtcatgttccagcagttagctggagaggacatggagatc
agtgttcatgagctcaggaccatccttaacagagtggtgagtcgacataaggacctcaga
actgacggattcagtatggagtcctgtaggagcatggtcaacctcttggataaagatggc
agtgctcgtctaggattgatggaattccagattctgtggaataagatcagaaagtggctg
accatctttaggcagtacgatcttgacagatcaggaaccatgagtgcttacgagatgcgc
cttgctcttgaatcagcaggtttcaaactcaataacaaattaaaccaggttcttgttgca
agatatgcggacaatgaaatgattgatttcgataacttcatctgctgcctggtcaaactg
gaagtcatgttccgatcctttcagcagctggacagagatgaaagtggcactgttgagctg
aatctaactgagtggctgctgatgacactgtgtggataa
DBGET
integrated database retrieval system
