Polyodon spathula (Mississippi paddlefish): 121315729
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Entry
121315729 CDS
T07273
Name
(RefSeq) elongation factor 1-alpha 1
KO
K03231
elongation factor 1-alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121315729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121315729
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121315729
03012 Translation factors [BR:
pspa03012
]
121315729
04131 Membrane trafficking [BR:
pspa04131
]
121315729
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121315729
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
121315729
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
121315729
Translation factors [BR:
pspa03012
]
Eukaryotic type
Elongation factors
121315729
Membrane trafficking [BR:
pspa04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
121315729
Exosome [BR:
pspa04147
]
Exosomal proteins
Proteins found in most exosomes
121315729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Gtr1_RagA
Motif
Other DBs
NCBI-GeneID:
121315729
NCBI-ProteinID:
XP_041106016
LinkDB
All DBs
Position
5:21725956..21732012
Genome browser
AA seq
462 aa
AA seq
DB search
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYNQKRYEEIVKEVSTYIKK
IGYNPDTVAFVPISGWNGDNMLEPSSNMTWFKGWKVTRKDGSVAGTTLLEALDAIQPPSR
PTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGVVVTFAPVNITTEVKSVEMHHETLS
EALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPQEAASFTAQVIILNHPGQISAGYAPV
LDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVDMIPGKPMCVESFSDYPP
LGRFAVRDMRQTVAVGVIKAVEKKASTSGKITKSAQKAQKAK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggaaaagactcacatcaacatcgtagttattggacatgtggattctggcaag
tccaccactacaggtcatctcatctacaaatgcggaggcattgacaagagaactattgag
aaatttgagaaggaagctgctgagatgggcaagggctccttcaagtatgcctgggtgttg
gacaaactgaaagctgaacgtgagcgtggtatcaccattgacatctccctgtggaagttt
gaaaccagcaagtactatgttaccatcattgatgctccagggcacagggacttcatcaag
aacatgatcaccggtacctcacaggctgactgtgccgttctgattgtcgccgcgggtgtt
ggagagtttgaagctggcatctccaagaacgggcagactcgcgagcatgcattgctggcc
tacaccctgggggtcaaacagctgatcgttggcgttaacaagatggactccactgagcca
ccttacaaccagaagagatacgaagaaatcgtcaaggaagtcagcacttatatcaagaag
atcggctacaacccagacaccgtggcttttgtgccaatctctggctggaacggtgacaat
atgttggagcccagctctaacatgacctggttcaagggctggaaggtcacccgcaaagat
ggcagtgttgctggtactacccttctggaagcgttggatgcaatccagccaccatctcgt
cccactgataaagccctacgtctgcctctgcaggatgtctacaaaattggaggtatcggt
actgtgccagtaggccgtgttgaaactggtgtcctgaaaccaggtgtggtggttaccttc
gctcctgtcaacatcaccactgaagtcaaatctgttgaaatgcaccatgagactctgtcc
gaagcacttcctggggacaatgttggcttcaatgtcaagaatgtatcagtgaaagacatc
cgccgtggaaacgttgccggagacagcaagaatgaccctccacaggaggctgctagcttc
actgcacaggtcatcatcctgaaccacccaggtcagatcagcgctggctatgcccctgtg
ctggattgccacactgctcacattgcctgcaaattcgctgagctgaaggagaaaattgat
cgtcgttctggcaagaaactggaagacaaccccaaatccttgaaatctggtgatgctgcc
atcgttgacatgatcccaggcaaacctatgtgtgttgagagcttctctgactatcctcct
ctggggcgctttgctgtgcgtgacatgaggcagactgtggctgtcggagtcatcaaggct
gtggagaagaaggcttccacctcggggaagatcactaagtctgcccagaaggctcaaaag
gctaaatga
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