Polyodon spathula (Mississippi paddlefish): 121315777
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Entry
121315777 CDS
T07273
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121315777
09122 Translation
03013 Nucleocytoplasmic transport
121315777
03015 mRNA surveillance pathway
121315777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121315777
03041 Spliceosome [BR:
pspa03041
]
121315777
03009 Ribosome biogenesis [BR:
pspa03009
]
121315777
03012 Translation factors [BR:
pspa03012
]
121315777
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121315777
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121315777
mRNA cycle factors
Stress granule specific factors
121315777
Spliceosome [BR:
pspa03041
]
Complex C
Other components
EJC/TREX
121315777
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
Helicases
121315777
Translation factors [BR:
pspa03012
]
Eukaryotic type
Initiation factors
eIF-4
121315777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
121315777
NCBI-ProteinID:
XP_041106103
LinkDB
All DBs
Position
5:27067790..27080716
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAPVPIRKRLLKDEDMTKMEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctccagttcccattaggaagcgtctcctgaaggacgaagacatgaccaaa
atggaattcgagaccagcgaggaggtcgatgtgacccccacatttgacacaatgggcctg
cgggaggacctactccgtgggatctacgcttacgggtttgagaagccatcagctatccaa
cagagagcaattaaacagatcattaagggcagagatgtgattgcacagtctcagtccggt
actggtaaaacagcaactttctgcgtctcagtgctgcagtgcttggatattcaggtccgt
gaaacccaggcattgatcctggcaccaaccagagagctggcaggacaaatacaaaaggtg
ctcttggctcttggtgactacatgaatgtgcagtgtcatgcatgtattggagggacaaat
gttggagaagacatcaggaaacttgattatgggcagcatgttgttgcaggcaccccagga
cgtgtttttgacatgattcgcaggagaagtttacgaacccgtgctatcaaaatgctggtt
cttgatgaagctgatgagatgttaaataaaggttttaaggagcagatctatgacgtgtac
agatacttgcctcctgccactcaagtttgtctgatcagtgctacattaccacatgaaatc
ctggagatgactaacaaatttatgactgatccaatccgaatcctggtcaaacgtgatgag
ttgacgctggaaggcatcaagcagtttttcgttgctgtagaaagagaggagtggaagttt
gatacactgtgtgatctgtatgacactctgaccatcacacaggcagtcatcttctgtaac
accaaaagaaaggtggactggctgactgagaagatgagagaagccaacttcactgtgtct
tcgatgcatggagatatgccccagaaagagcgagagtccatcatgaaagagttcagatct
ggagcaagccgagtcctcatttcgacagacgtttgggccaggggattggatgtacctcaa
gtgtcgctgatcatcaactatgacctaccaaacaacagagaattgtacatccacagaatt
gggcgatcgggtcgttacggtcgtaaaggtgttgctatcaactttgtgaaaaacgatgac
atccgcatccttcgagatattgaacagtactactccacacagattgatgaaatgcccatg
aacgttgctgatttgatttag
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