Polyodon spathula (Mississippi paddlefish): 121315824
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Entry
121315824 CDS
T07273
Name
(RefSeq) probable ribonuclease ZC3H12D
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121315824
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121315824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
RuvA_C
zf-CCCH_4
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
121315824
NCBI-ProteinID:
XP_041106227
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All DBs
Position
5:30224580..30232943
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AA seq
622 aa
AA seq
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MSRHQNKIERFLKLGYSEKDIVRVLESLRQDALTNDILEELIKTGHKAEAVQLRSSSPQL
VARGCSPQEPVKPRPVAEEEDSDPCSVLRPIVIDGSNIAMSHGNKQVFSCHGIQLAVLWF
WERGHRDITVFVPSWRKEQPRPETPITDQNILHELEKRKILVYTPSRRVKGKRVVCYDDR
YIVKLAYESDGIIVSNDNYRDLQNEKQDWKRFIEGRLLMYSFVNDKFMPPDDPLGRSGPL
IENFLRKTPNIPEHKWQHCPYGKKCTYGIKCKFYHPERSSQSHMSVADELRAKTKSTSPK
PIKEDELPLNTRARSANQEELPVALGMAVSCGQNAKMSVCNDLQSTAPLSHEEVHHRYSP
NHLLDSQKQSANLSYLQYSTTFQNPGCDEEFESMEAKFSTMFIQEKPDKQSDFCSMEYDR
APCSSWCDSPNYSKNSGYFFSHAHSMDCACSHRCSPAGIAPNPSFCYRNPPQKMPQSCGS
QLQVTASPTISPGLYVNFLPMHNFENQKQNSCDLTAPPCDQVPLTVQEQQQPHYHFNHGH
RATLNNSWRNGQMGSPAANQANTLSSEQSFSLTEQKKYVRNQLGTTFPQGVVDQVMSLYP
NVIDRRHLISLIYKFKSNHNRF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacaccagaacaaaatagaacgcttcctcaaactgggctactctgagaaagac
attgtgagggtgctagagagccttcgacaggatgccttgaccaatgacatcttggaggag
ctgattaaaacgggccataaggctgaggcagtccaactgaggagctccagcccacagctt
gtggccagaggttgcagcccccaagaacctgtgaagccaagaccagtggcagaagaggag
gacagtgacccttgcagtgtcctgaggcccatagtcattgacggcagtaacattgccatg
agtcatggaaataaacaggtgttttcgtgccacgggatccagctggcagtgctgtggttc
tgggaaagaggccaccgggatattacagtgtttgtcccctcctggaggaaggagcagccc
agaccagagactcccattacagaccagaatatactccatgagctggaaaagagaaagata
cttgtgtacaccccgtcccgccgtgtcaaggggaagagagtggtgtgctacgacgaccgc
tacattgtgaaactggcctacgagtcagatgggattatcgtatcaaacgataactaccgc
gacctgcagaacgagaaacaagactggaaaagatttatcgaaggcaggcttctgatgtac
tcttttgtcaatgacaagtttatgccacccgatgatcctttgggtaggagtggacccctc
attgaaaactttttgaggaagacaccgaacattcctgaacacaaatggcagcattgtcca
tatggtaagaagtgtacatatggaattaaatgcaaattctaccatcctgaaagatccagt
cagtcacacatgtcagttgctgatgaactcagagccaaaacaaagtcaacttcacccaaa
ccaattaaagaagatgagctgcctcttaacaccagagcaaggtctgctaatcaggaggag
cttcccgttgcattaggcatggctgtctcttgtggacagaatgccaaaatgtctgtgtgc
aacgaccttcagtcaactgcacctttgagccatgaagaagtccaccacagatattcaccc
aatcatttgctagacagtcaaaaacaaagcgcaaatctttcctatttgcagtattccact
accttccaaaatccagggtgcgatgaagaatttgagtccatggaagccaaattctccact
atgttcattcaggagaagccagacaaacaaagtgacttctgttccatggagtatgacagg
gccccatgctcaagctggtgtgatagcccaaactatagtaaaaacagtggttacttcttt
tctcatgctcacagcatggactgtgcttgttcacacaggtgcagccctgctggaatagct
ccaaatccttctttctgctacaggaaccccccacagaaaatgcctcagagctgcggtagc
cagttacaggtgacagcaagtccaacaataagccctggtttatatgttaactttctcccc
atgcacaattttgaaaaccagaaacaaaattcctgtgatttaacagcaccaccatgcgac
caagttccgctcacagtacaagaacagcagcaacctcattatcattttaaccacggtcac
agagccactctaaacaacagctggagaaatggacagatggggtctccagcagcaaaccag
gctaacacattgtcttcagagcagagtttttcactcactgaacaaaaaaagtatgtcaga
aaccagttaggtaccacctttccacagggagttgtggatcaggtcatgtctttgtaccca
aatgttatagacagaaggcatctcatttcactaatctacaaatttaaaagtaatcacaac
cgtttttaa
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