Polyodon spathula (Mississippi paddlefish): 121315864
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Entry
121315864 CDS
T07273
Name
(RefSeq) uncharacterized protein LOC121315864 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121315864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121315864
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121315864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBS1_N
Motif
Other DBs
NCBI-GeneID:
121315864
NCBI-ProteinID:
XP_041106331
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Position
5:complement(33208529..33251471)
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AA seq
628 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDTCGQSVDDHCVSPTTAAELIYSKHDEPSVLREPLEEKECV
VEEREVPAFSPSMNHEELSEVDQARLYSCLDQMRQVLGDSVPDPILVEAVLKGRFDLQKA
LDLMLSEEGKKTSSTRIQREISTGKAAKGDLFSSSKFGISKHDGPLHNTETSSSLDLSSL
LAQLELPAVVLTDRLSSTNLKMHCSDEGGSKTCQNNFLNLSLSELNNASFKKTEHESTKS
NSLGKTNLAQLISNHERDSQRGVHFTPLAFAGCATAVPKSKSEMSDPSLPQKVALSDTSA
EMGPRYTSALGSLTDFNTPFPNTNCLPSSLGTLTLTSMQDPKQNLKPEAFGSLHSVFQSK
PLDITSGNNSYKTHGGSPSLADLIQEHTKTSLSPYDTLHDSQVMPVAEDSIPLSFASLSL
SQLASQHEAKTGSLPLTGTLSSLLTPVTTKAREQENVCLSSLIADSVERAPETWLMNNKH
DVLESQPSVGLDLSVDLSMLIQKPPEVEMTKIVLSKSKDQNINPSGNSQSFCKGKTGQVS
KRRTMTVSWSKELIAKPSVFALALSVQCPPRGFRKQVLGIHKAFLYGKQIQVVKRKDQGP
LFKIAPFDFQTPSPDDIIKAKQKKAFTR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacacagaaatgttcggggttataactacgatgaagattttgacgacgatgac
acatgtggacagtctgttgatgaccactgtgtatcaccgactacagctgcagagttaatc
tattccaagcacgacgagccctctgtcttaagagagccccttgaagagaaggagtgtgtg
gttgaggagcgggaggtacccgctttttcacccagcatgaatcatgaagaacttagtgaa
gtagatcaagctcgtttgtattcatgccttgatcagatgcgacaggtccttggtgactct
gtcccggatcctattctggtggaagcggttcttaagggccggtttgatttacagaaggcc
ctggacctcatgttatctgaagaaggcaagaagacatcaagtacaagaatccagagagag
atctctacagggaaagctgcaaaaggagacctattttcttcatcaaaatttggaatttct
aagcatgatgggccattgcataatacagaaacttcatcatctttggatcttagcagtctt
ttagcacaacttgagttaccagcagttgttttaactgacagactttcctctacaaacctt
aagatgcactgttctgatgagggaggatcaaagacttgccaaaacaatttcttgaatctc
tcactgtctgaactgaataatgcgtcatttaaaaaaacagaacatgagagcacaaaaagt
aactcactggggaaaaccaatctcgcacagttgatttctaaccatgagcgtgacagtcaa
agaggtgttcattttactcctttggcttttgctggctgtgctactgcagtgcccaagagt
aaatcagaaatgtcagatccatcattgcctcaaaaagtggcgctttcagacactagtgca
gaaatgggccccaggtatacctctgccctgggtagcctaactgattttaatacccccttt
cccaataccaactgcttgccttcctctctgggcactttgactttgacaagcatgcaagat
ccaaagcaaaacctgaaacctgaggcatttggcagtctccactcagtttttcagagcaag
cccttagatattactagtggaaataacagctataaaacacatggtggaagcccgtccctg
gcagacctcatccaggagcatacaaaaactagtctgagtccttacgataccctgcatgac
agccaggtcatgccagtggcagaagacagtatacctttgtcctttgcctctctatcattg
tcacagttagcttctcaacacgaggccaaaactggttctcttccactaacaggaactttg
tcttcattactgactcctgtaactaccaaagccagggagcaagaaaatgtgtgtctgtcc
agcttgattgcagacagtgttgagagagccccagagacttggttaatgaataataagcat
gatgtcctagagtcgcagccctctgtgggattggatttgagtgtagatttgagtatgctt
atccagaaaccacctgaagtagaaatgacaaaaatcgtattgtcaaagtcaaaagatcaa
aatataaacccttctggtaacagtcaatcattttgcaagggcaaaacagggcaagtgtct
aaaaggcgaaccatgactgtctcttggtcaaaagaactaattgctaaaccctcagtattt
gccttggctttgtcagttcagtgtcctcccaggggcttcaggaaacaagtacttggtatt
cataaagcattcttgtatggcaagcagattcaagtggtaaaaagaaaagaccagggacct
ctgtttaaaatcgcaccatttgactttcagacaccttctccagatgatattataaaagct
aaacaaaagaaggcttttaccagataa
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