Polyodon spathula (Mississippi paddlefish): 121315898
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Entry
121315898 CDS
T07273
Name
(RefSeq) afadin-like isoform X1
KO
K05702
afadin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04520
Adherens junction
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121315898
04530 Tight junction
121315898
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
Yop-YscD_cpl
PDZ_2
RA_3
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
121315898
NCBI-ProteinID:
XP_041106414
LinkDB
All DBs
Position
5:complement(35495328..35610029)
Genome browser
AA seq
1924 aa
AA seq
DB search
MSGSREDERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDLDEKPLVVQLNWNKD
DREGRFVLKNENDVLPKKVQSNGPEKQEKEGVIQNFKRTLSKKDRKKEKKRDKEGFPRLQ
DGDEHSLHKEDGENSRLAAEVYKDMPETSFTRTISNPDVVIKRRRQQKLEQRMQEFGRPD
SGGTLKIYADSLKPNIPYKTILLSATDTADFAVAEALKKYGLEKENPSNYCIARVLPPPG
SQHSDDNRAWETILEDAECPLQIFREWPGDKETLVFQLKKRPLDYVSKKARKPDEKVPRG
KSVDGSLLGFLPPEKLPYLVELSPDGSDSRDKPKLYRLQMRVTEVGSDKTEENSIQLFGP
GIQPHHCDLTHMDDMVTVTPQSFDAETYVDGQRIAETTLLRSGMKVQFGSYVFKFVDPSN
DHGMIKKSMDTGPMVKGQRHKSGSVPETTFELDGDIHSGTALQTSKSSSRLDVERSTLSE
HSMVKPVVREQQQDYRKQESRSQDGQRPELVLPASIEFRESSEDAFLSAIINYTNSSTVY
FKLSPTYVLYMTCRYVLSSQYRPEMSPSERTHKVIAIVNKMVSTMEGVIQEIPEGDQKQK
NIAGALAFWMANASELLNFIKQDKDLSRVTLDAQDVLAHLVQMAFKYLVHCLQSDLNNYM
PAFLEDPEEQNPQRPTIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRL
VTEPDSELCSHYWGAILRQQLGHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSMQD
VPNINNTCFKLNSLQLQALLQNYHCAPDEPNIPPDLMEKVVAVAENTADELARSDSREVQ
LEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLEPLCQRGYCRLTPHPRSPGTWTIYFE
GADYEHHFSTDSTELPMPKDPEIVTVTLKKHNGMGLSIVAAKGAGQEKLGIYVKSVVKGG
AADTDGRLAAGDQLLSVDGRNLVGLSQEKAAELMTRTGSVVTLEVAKQGAIYHGLATLLN
QPSPMMQRASDRGRGSGKPRPKSEGFELYNNSAQNGSPESSQMPWGEYPEPNKTSGEERL
LKNRADHRSSPNVANQAHSPGGKPVNSGGPTSKITSVSTGNLYSDEQEPPPRPEAYPIPT
QTSTREYFTFPASKSQDRMGPGPGQQWQNYEDRLPGQPDNHHSGNRSIQRVTRSQEELCD
DRVAYQPERMRQEEIFQMQQREMEYLRGNGEHWNHQVSSSVESSTSSQEHLNYSTSSSKV
YNHKSGPGRWKTPGPPNSTAVAASQPVLSDLPPPPPPPPPVHYTDDFESQADLPLPPPPP
AGRQQQAAAAAAADRKKRDEQQRWYEKEKARLEEERDRKRREQDKKLGQVHIPPGPGVPP
HPNHHQQQHQPPLSPMLIQHQQAPPPMPLQQQQYHPPPMMPQQPPWIEKPSSLPRAPPSR
QDTVIRELLPQQQPRTIERRDLQYIVSKEDLTSGDSLSPDPWKRDAREKMEKQQQLHIVD
MLNKEIQEIQAKPERTAEENDRLRKLMLEWQFQKRLQESKENEEDEEDDEDVDTMLIMQR
LEAEKRARLQDEERRRKQQLEEIRKREAEEWAKQEEERRRREEERNRREAEEKRRQEEEY
YNRLEAERRRQHDEAQRKLLTPDEPGLYRPPLPRDYELPPPPPSSANTPPPPPQRNTSYL
KTQVFSPDTVYTAKFVSYNDEEEDSSLAGQVKFSATRKSYGDLPPAPKPQPHQPSVRPPR
PVSDGIFLSNSFQQPPANANSTAFKAGPPPPPSKPSFNPPGNSKGYHSYTGTTTGVVGLN
EVYRDSRDRWVKSGQGQDGSLTGEAPESMTFKERQRLFSHGQDVSNKVKASRKLMELENE
LNIK
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaagccgggaggacgagcggcgaaaactcgcagacatcattaaccactggaat
gctaaccggcttgacctgttcgagatcagtcagcccaccgaggacctggagttccatggg
gtgatgcggttttactttcaagatcgagttgcaggaaactttgccactaaatgtatccgg
gtgtcgagcacagccaccacgcaggacgtgattgagacgctggctgagaagttccgccct
gacatgaggatgctctcgtctcccaaatactccctttatgaagtgcacgtcagcggggaa
gaacgcagactggatctggatgagaaacctctggtggtgcagctgaactggaacaaagat
gacagggaaggcagatttgtactgaagaacgagaacgacgtactccctaagaaagtgcag
agcaacgggcctgaaaagcaggagaaggaaggagtgattcagaatttcaagcgcacgctc
tccaagaaggataggaagaaagagaagaagagggacaaagagggctttccaaggttgcag
gacggggacgagcattctctgcacaaggaggatggtgagaattcccgattggctgctgag
gtttacaaggacatgccagaaaccagcttcacgagaacgatatccaaccctgatgtggtc
attaagcgccggcggcaacaaaaactggagcagaggatgcaggagttcggccgacctgat
tcgggggggacattgaagatatatgcagacagtttgaaaccaaatataccgtacaagaca
atccttctgtccgccacagacacagcagactttgccgtcgctgaggcgctgaagaagtat
ggcctggaaaaggaaaaccccagtaactactgtatcgctcgggtcttgccacctcctgga
tctcagcactccgatgacaatagggcttgggagactatccttgaagatgctgagtgtccc
cttcagatcttcagagagtggccgggcgacaaagaaacattagttttccagctcaagaaa
cgaccactagactatgtctcaaagaaagctcggaagcctgacgagaaagtgccgaggggg
aaatctgtcgacgggtctctccttggctttttacctcctgagaagctgccctacctggta
gagctgagcccagatggctcagactccagggataaaccaaagctctatcggttacagatg
cgtgtcacagaggttggctcagataaaacggaggaaaactcgatccagctgtttggccca
ggaatccagccccaccactgtgacctcactcacatggacgatatggtaactgtgacaccg
caaagttttgatgctgagacctatgttgacggtcagcgaattgctgagaccaccttgctg
agaagtggcatgaaggtccagttcgggtcttatgttttcaagtttgtggatcccagcaat
gaccatgggatgatcaaaaagagcatggacactggccctatggtcaaaggacaacggcac
aaatcagggagcgttcctgaaacaacatttgaactggatggggatatccacagtgggaca
gcgctgcagacaagcaagagttcgagcaggctggatgttgagagatccaccctgagcgag
cacagcatggtgaagcccgtggtgcgagagcagcagcaggactaccgcaagcaggagtcc
agatctcaggatggacaaagaccagagctggtgctgccagccagcatagagttccgggaa
agctccgaagatgcattcctgtccgctattatcaactacaccaacagctctacagtgtac
ttcaagctgtcccccacctacgtcctgtatatgacctgtcgctacgtgctgtccagccag
taccggcccgagatgagtccctccgagcgcacgcataaagtgatagccatagtcaacaag
atggtgagcacgatggagggagtcattcaggagatacccgagggggatcagaaacagaag
aatattgcaggagctcttgccttctggatggcaaacgcttcagagctgctcaacttcatt
aagcaggataaagacctcagccgagtcacattggatgctcaggacgtcttggctcattta
gtacaaatggccttcaagtacctggtccactgtctacagtctgatctcaacaactacatg
ccagcattcctagaggacccagaggagcagaatccacaacggcccacaatagaggatgtc
ctgcacaccctgacgggagccatgtcgctgctgcgccgctgcagagtgaatgccgctctc
accatccagctcttttcccagctcttccacttcatcaacatgtggcttttcaacaggctg
gtgactgagcctgactcggagctctgttcccactactggggggccatcctccgccagcag
ctggggcatatcgaggcctgggctgagaaacagggtttggagttggcagctgactgccac
ctgagcagaatagttcaggccacaacacttctgaccatggacaaatattccatgcaggac
gttcctaacattaacaatacctgcttcaagttgaactctctacagctgcaggctctgctg
cagaattaccactgtgccccagatgagccaaacattcctcctgacctgatggagaaagtg
gtggcagtggctgagaacacggcagacgagcttgcccgcagtgatagccgtgaggtccaa
ctggaggaggacccagacctgcagctgccgttcctcttgcctgaagatggctactcatgt
gatgtcgtccgcaacattcccaacggcttccaggagttcttggagcccctgtgtcagaga
ggctactgcaggctgacacctcatcctcgctctccaggcacctggaccatatactttgaa
ggggcagactacgaacatcacttttccactgacagcactgagttgcccatgccgaaggat
ccagaaattgtcactgtgactcttaagaagcacaatggaatgggtctcagtattgtggct
gcaaagggtgctgggcaggagaagctgggaatctatgtcaaatctgtggtaaaaggagga
gctgccgatacagatggccggcttgcagcaggagatcagttgctcagtgtagatggacgc
aacttagtgggcctgtcccaagaaaaggctgcagaattgatgacacggacaggatcggta
gtaacactagaagtagcaaaacagggagcaatttaccacggattggccacgctacttaac
caaccgtcccctatgatgcagagagcttcagaccgtggccgtggctcaggtaaacccaga
ccaaagagtgaaggctttgagctctacaataattccgcacagaacggctcccctgagagt
tcacagatgccgtggggggagtaccctgaaccaaacaaaacatcaggagaggagagacta
cttaagaacagggccgaccaccgctctagtcccaatgttgccaaccaagctcacagtcca
ggaggaaagcctgttaattcaggtggcccaacatcaaaaatcacatctgtctcaactgga
aacctttacagtgatgaacaggagcccccaccacgacccgaagcatatccaatccctacc
cagacctccacaagggagtactttactttccctgcttcgaagtctcaggacaggatgggg
cctggccccgggcagcagtggcagaactatgaggacaggctcccaggccagcctgataat
caccactctggcaataggtccattcagcgggtaactcgctcccaggaggagctctgtgac
gaccgagtggcttaccagccagagaggatgcggcaggaagagatttttcagatgcagcag
cgggagatggagtatctgcggggcaatggtgagcactggaaccatcaggtctcctcctct
gtggagtccagcacatccagccaggagcacctaaactactccacttcctcctccaaggtc
tacaaccacaagagtggtccgggccgatggaagacaccagggccacctaattccaccgct
gtggctgcctcccagcctgtcctctcagaccttccgcccccaccccctccccctcctcca
gtacactacacagatgactttgagtcccaggcagacctgcctctccctcctccaccccct
gctggcaggcagcagcaggctgcagctgccgcagcagctgaccgcaagaagcgtgacgag
caacagcgctggtacgagaaggagaaggcacggttagaggaagagagggacaggaaacgg
agggagcaggacaagaagctgggccaggtccacatccctcctggaccaggagtccctccc
catcccaaccaccaccagcagcagcatcagcctccattgtcgccaatgctaatccagcac
caacaggcaccaccacctatgcctctacagcagcagcagtatcatccccctcccatgatg
ccccagcagcctccctggattgagaagccttccagcctgccccgtgcacccccttcccgc
caggacaccgtaatccgggagctactcccccagcagcagccacgcaccatcgagcgccgg
gatctgcagtacatcgtcagcaaggaggacctcacctctggggacagtctgtcccctgac
ccctggaagcgggatgcccgggagaagatggagaagcagcagcagctgcacatcgtggac
atgctgaacaaggagatccaggagatccaggctaagccggagcgcactgccgaggagaac
gaccggctgcgtaaactgatgctggagtggcagtttcaaaagcggctgcaggagtccaag
gagaacgaagaggacgaggaggatgatgaggacgtggacaccatgctgatcatgcagcgc
ctggaggctgagaagagagcccggttgcaggatgaggaacgcagacgcaaacagcagctg
gaagagatccgcaagcgagaggcagaagaatgggcgaaacaagaggaagagcgccgcagg
agagaagaggagaggaaccggcgagaggccgaggagaagaggagacaggaagaggagtac
tacaaccgcttggaagcagagaggcgccgacagcacgatgaggctcaacggaagctgcta
acacctgacgagcctggtctgtacagacctcccctcccccgggactacgagctaccccct
ccccctccctcctcagctaacacacctccacccccgcctcagagaaacacctcttacctc
aaaacgcaggtcttctcccctgacacagtgtacactgccaagttcgtttcatacaatgat
gaggaggaggactcgagcctagcaggtcaggttaagttttccgccaccaggaaatcctat
ggcgaccttcctcctgctcccaagccgcagcctcaccagccatctgtccgcccgccccgc
ccggtctctgatgggatatttctttccaactcattccagcagccaccagccaatgccaac
agtactgcttttaaggcagggccccctccccctcccagcaagcccagcttcaacccaccc
ggcaactccaaaggatatcattcgtacactggaactacaacaggggttgtaggattaaat
gaagtttacagggactcgcgggatagatgggtcaaaagtggtcaaggtcaagatggttct
ttgactggtgaagctccagagagtatgactttcaaagaacgccagcgattgttttcacat
ggacaagatgtgtcaaataaagtcaaggcatcaagaaaactgatggagttggagaacgaa
ctcaacataaaataa
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