Polyodon spathula (Mississippi paddlefish): 121315929
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Entry
121315929 CDS
T07273
Name
(RefSeq) WD repeat-containing protein 36-like
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121315929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121315929
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121315929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_VPS8
WD40_RFWD3
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Beta-prop_LRRK2
Beta-prop_EIPR1
Beta-prop_HPS5
Sterile
Motif
Other DBs
NCBI-GeneID:
121315929
NCBI-ProteinID:
XP_041106481
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Position
1:complement(24591055..24637897)
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AA seq
895 aa
AA seq
DB search
MSVGHRKGSAIFSGFRALGLYSNHLPHVVRYHKRHREFYVVTSVGKCFHTYNVKKLGIVA
VSNALSGDITCLAADRMLVFVAHGTIVKAFARSKEVVHTYKGHNAEVHLLQPFGDHVISV
DRDNVVVIWDVQSEEEYLQLNFDKMVFAVSAIMHPSTYLNKILLGSEQGGLQLWNVKSNK
LLYTFSGWGSGVTVLQQAPAVDVVAVGLASGQIVIHNIKYDESLMKFQQDWGPITAISFR
TDGHPVMAAGSPVGHIGLWDLDDKKLISQMRNAHTTAIAGMTFVHGEPLLITNGADNALR
VWVFDVPGGGGRLLRSRMGHSAPPTKIQHHGQNGQNILSAGQDGTLQSFSTVHERFNKSL
GHGSINKKKSKRKGLQYDTMKLPPITAFASETARQSDWDGIVACHRGYLIATTWNYQKTS
MGAYKLEPERFHKDRGLNVHATAVDITSCGNFGVVALSTGHIDVYNMQSGMHRGQYGKEK
AHEGPVRGVAVDGLNQLTISAGADRLIKFWKFKSKELVHTATLSSSPASILLHRDSGMLA
ISLDDFSINIMDIETRKIVRKFSGHRGQINDMSFSPDSRWLVTASMDCTIRTWDLPSGCL
VDCFLLDSAAVSITMSPTGDFLVSSHVDDLGIYLWSNNTLFNLVSLRPLPSDYEPPVVTL
PGTCPAEDLDSPEDDEEPSDEMIQYESPEQLGEQLVTLSLLPDSRWKNLLNLDVIKKRNK
PKEPPKVPKSAPFFIPTLPGLVPRFAVSEDQNAEEQSKIVNLGVLAQKSDFYMQLEDALV
SNNYSSTVRLLKEMGPSRIETELRSLAPEGGGSLDVMQSFLRMIGSILDSKRDFDLAQAY
LALFLKLHLKLISQESTLMEEASKVLGPLEETWTQMQMLFSQSLCLLGYMKSALL
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaggacacaggaaaggaagtgctatattctctggctttagagctttggggctc
tactccaaccacctaccccatgtggttcgctatcacaagaggcaccgtgaattctacgtg
gtcacttctgtcggaaaatgcttccatacttacaacgtaaagaagcttgggattgttgca
gtcagcaatgcactttctggggacatcacttgcctggcagctgataggatgctggtcttc
gttgctcatggaacaattgtgaaggcatttgccagaagcaaagaggtggtacacacttac
aaaggccacaatgcagaagttcatctattgcagccatttggggaccatgtgatttcagtg
gacagagataatgttgttgttatctgggatgtacagtctgaagaggagtacctgcagtta
aactttgataagatggtgtttgcagtctctgccataatgcatccaagcacatatctcaat
aaaattctgttaggaagcgagcaggggggtcttcagctatggaatgtcaaatcaaacaaa
cttttgtacacattctcaggctggggttcaggagtgacagtacttcaacaggctccagca
gtggatgtagtagcagtaggacttgcatcggggcagattgtcattcacaacataaagtat
gacgagtcattaatgaagtttcagcaagactggggtccaattacagcaatatccttccgc
acagatggtcatccagtaatggctgctgggagccctgttggacacattgggctgtgggac
ttggatgataagaaactaatcagccagatgagaaatgctcatacaacagccatcgcaggg
atgacgtttgtccatggggaaccacttctgattacaaatggtgctgataatgccttacgg
gtgtgggtatttgatgtcccgggaggtggtggccgcttgttgagaagccgcatgggacac
agtgctcctcctaccaaaatacagcaccatgggcaaaacgggcaaaacattcttagtgct
ggtcaagatggaacgttgcagtcgttttctactgttcatgaacggttcaataagagcttg
ggacatggttccattaacaaaaagaaatcgaagaggaaaggacttcagtatgataccatg
aaactccctcccattactgcgtttgcttcagaaacggcacgccagagtgattgggatggt
atcgttgcctgccacagaggctatcttatcgcaacaacatggaattaccagaagacatct
atgggggcatacaaactggagccagagcgattccacaaagatcggggattgaatgtgcac
gccacagctgtggatataacatcttgtggcaactttggtgtggtagcactttcaacagga
cacattgatgtatataacatgcagtcaggcatgcacagaggtcaatatggcaaagagaaa
gcccatgaaggtcctgttcgaggggttgctgtagatgggctaaaccagctgactatcagt
gctggtgcagacagactcatcaagttttggaagttcaagtctaaggaattggttcacacc
gctacactgagttcctctcctgcttccatacttttacatagagacagtggaatgttggcc
atttctctggatgacttcagtattaatattatggacattgaaacaagaaagatagttaga
aagttttcaggacatcgaggacaaatcaatgatatgtcctttagtccggacagtcgatgg
ttagtaactgcctcaatggactgcactattaggacatgggatcttccatctggctgcctt
gtagactgctttttgttagattcagcagctgtgagcatcacaatgtcacctactggagat
ttcctggtctcatcgcacgtagacgatctgggaatttatctgtggtccaacaacacgctg
tttaatctggtttccctgcgccccttgccttctgattatgagcccccagtggtgacactt
cctggaacttgtcctgcagaagatttggacagccccgaagatgacgaggagcccagtgat
gagatgatccaatatgaatccccagagcagctgggagagcagttggtgacactgtcttta
ctgccagactcgagatggaaaaacctcctcaatttggatgtcatcaagaaaagaaacaag
cccaaggagcccccgaaggtgcccaaatctgccccgttcttcattcctaccctgcccggt
cttgttccccgctttgctgtgtctgaggatcagaatgctgaagagcagtcaaaaattgta
aatcttggagtactggcacagaaatctgatttctacatgcaactcgaggatgccttagtc
agcaacaactattcctctacagtgaggctcttaaaggagatgggaccctcccgtattgaa
acggagttgcgaagtctagcccctgaaggtggcggctccctggatgtgatgcagagcttc
ctcagaatgattggcagcattctggactccaaacgtgattttgacctggcccaagcctac
cttgctttgtttctaaagttgcaccttaaattgatttcccaagaatcaacactgatggaa
gaagcatccaaagtgttggggcctctggaagaaacctggacgcagatgcagatgcttttc
agccagagcctctgtctgttgggatacatgaaaagtgctttgctctga
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