Polyodon spathula (Mississippi paddlefish): 121316045
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Entry
121316045 CDS
T07273
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121316045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121316045
03036 Chromosome and associated proteins [BR:
pspa03036
]
121316045
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121316045
Coactivators
SAGA/TFTC/STAGA complex
121316045
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121316045
STAGA complex
121316045
TFTC complex
121316045
SAGA complex
121316045
SLIK complex
121316045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
RMC1_N
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_EIPR1
PEP5_VPS11_N
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_IP5PC_F
PROPPIN
Ge1_WD40
Beta-prop_NWD2_C
eIF2A
WD_LRWD1
WDR54
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
121316045
NCBI-ProteinID:
XP_041106682
LinkDB
All DBs
Position
5:51865314..51894007
Genome browser
AA seq
594 aa
AA seq
DB search
MKRVRTEQFQYTVAQYLKRRQYVDSEGPLKGPKLSQTVEEMAANLTVQTESGCTNFVSAA
PCQADSQQYEIQFGQLRTFLTDTDVQWSWEVTSVLYPLFVYLHLDMVHCGLKSSVDSFYS
RFHNMFLQDTDQKDIIEQLRTTLTVQDISSNPKLRAFLDNKYVVHLTDEAYNYLLRYLQS
ENNTALCRVLASHIQVEVTSAQQTVYQLYGSGPSGVGVFSRGEASNNMEPGDVPASILQN
EAARNSLQECIKRVKDGPPSLSTVCFYAFHNTDQLLNSAEISANSKLLAAGFDNSCVKLW
SLRARKLKAEPHQVDVSRINLACDVIEDESEDEDSAGTEMKTLRGHCGPVYSTTFLTDSS
GLLSCSEDTTIRYWNLGSFTNTALYQGHAYPVWDIDISPCSLYFASGSHDRTARLWTFSR
TYPLRLYVGHLADVDCVKFHPNSNYIATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLA
FAPNGKYLASAGEDQRLKLWDLASGTLFKDLRGHTSNITSLSFSPDSSLIASASMDNSVR
VWDIRNTYCNAPADGSSSELVGVYTGQTNNVLSVQFMACNLLLVTGTAQENEEY
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacgtacagagcagttccagtacacggttgctcagtacctcaagcgtcgg
cagtatgtagactcagaaggtcctctgaaggggccgaaattgtctcagactgtagaggag
atggcagctaacctcacagttcaaacagagtcaggttgtaccaattttgtgtctgctgcc
ccttgtcaggcagactcacagcagtatgaaatacagtttggacaactgcgaacttttctg
actgatacagatgtgcagtggagctgggaagtgacctcggtgctgtaccccctattcgtc
tacctccaccttgacatggtccactgtggtctaaaaagctcggtggacagcttttatagc
cgcttccataacatgttcctgcaggacactgaccagaaggacattatagaacagttacga
actaccctgacagtccaggatatctcatctaatccaaaacttagagccttccttgacaat
aagtatgttgtccacctcactgatgaggcctacaactacctcctccgctacctccagagt
gagaacaacaccgctctctgtagggtgctagcctcccacatccaagtggaggttacttct
gcccagcagactgtctatcagttgtatggtagcggccccagcggtgtgggggttttttca
cgaggagaagccagcaataatatggagcctggggatgtgcctgctagcatcctgcagaac
gaagccgcccgcaactcgttacaagagtgtatcaaacgtgtgaaggacgggccgccgtca
ctcagcacggtctgcttctatgcatttcacaacaccgaccaactgctcaattccgctgag
atctccgccaacagcaagctgttagctgccggcttcgacaactcctgcgtcaagttgtgg
agcctgcgtgcccggaagctcaaggcagagccccaccaggtggacgtctcaagaatcaat
ttggcgtgtgacgtcattgaggatgagagtgaagatgaagacagtgctggtactgaaatg
aaaaccctaagaggacactgtgggccggtgtacagtactacattccttacagacagctca
ggactcctctcctgttctgaggacacaacaatcagatactggaacctcggcagttttact
aacactgctttgtaccagggacatgcgtacccggtgtgggacattgacattagcccgtgc
agcctttattttgctagtgggtcgcatgacaggactgctaggctttggacgtttagtcgg
acatacccattgcggctgtatgtgggtcacttggcagatgtagactgtgtcaagttccat
cccaactcaaattatattgccacagggtccactgacaaaactgtccggctgtggagtaca
cagcaagggaattccgtaagactgttcactggccaccgtggccctgttttatcactggcc
tttgcacccaatgggaagtacctggcatcagcaggggaagaccagaggctaaaactctgg
gacttggcatcgggtacattatttaaagacttgagggggcataccagcaacatcacaagc
ctctccttcagtcccgacagtagcttgatcgcctcggcctccatggacaattctgtcagg
gtttgggatatccgaaacacatactgcaatgcacctgctgacggctcctccagtgagcta
gttggcgtttatacgggacaaactaataatgtattgagcgtgcagtttatggcctgcaac
ttactactagtgactggaacagcacaggaaaacgaagaatattag
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