Polyodon spathula (Mississippi paddlefish): 121316153
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Entry
121316153 CDS
T07273
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04517
IgSF CAM signaling
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121316153
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121316153
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121316153
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121316153
Intermediate filaments
Intermediate filament-binding proteins
121316153
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SCAR_helical
SOS1_NGEF_PH
NPV_P10
PH_11
Motif
Other DBs
NCBI-GeneID:
121316153
NCBI-ProteinID:
XP_041106928
LinkDB
All DBs
Position
5:complement(63943163..64033651)
Genome browser
AA seq
2356 aa
AA seq
DB search
MTSAVATELDHMEIQHQYSDVNNRWDADEWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETEDNKEKKSAKDALL
LWCQMKTAGYQNVNIRNFTTCWRDGMAFNALIHKHRPDLIDFDKLKKSNVHYNLQNAFNL
AEQHLGLTKLLDPEDISVDQPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKTWERLEKAEHERELALRTELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGYDLQAVEAATKKHEAIETDIAAYEERVEA
VLAVARELEAENYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQKVFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHTLVEADIGIQADRVKAVNASAQKFASDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAVERRARLEESRRLWKFFWEMAEEEGWIREKEQI
LSSDDYGKDLTSVLRLLSKHKAFEDEMSGRYTHLQQTIREGEGMISDDHFGSDKIRERIT
DIQEQWANLEQLSAIRKKRLQEASNLYQFQADADDVDTWMLDVLRIVSSSDVGHDEYSTQ
SLVRKHKDVAEEIASYRPVIDTLEEQSKALPEEHAQSPEVLSRLSGIEERYKEVTELTRL
RKQALQDALALYKMSSEADACELWIDEKEQWLISMQIPEKLEDLEVIQHRFESLEPEMNN
QASRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFRDLVDQKKDSLSSALGVQNY
HLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEDKLSDLQKEAE
RLAAEHPDQAQAIMGRLAEITDVWEEMKTTLKNREESLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLTEAEKLLTQHENIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQSLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTELPTT
LESAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNISADKIQEKVDSIDDRHKKN
REAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELQSNKEWLDKIEKDGMQLVAEKPETEMVVKEKLSSLHKMWDDLESTTQTKAQCLFDAN
KAELFTQSCADLDKWLMGLEGQIHSDDYGKDLTSVSILLKKQQMLENQVEVRKKEVEELQ
SQAQVLSLEGKDTDEVDSRRQVVEQKFNELLAPLQQRKSYLMASKEIHQFNRDVEDEILW
VEERMPIATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNILTDGSPNAE
AIRQRLAGLQELWNLMIEETEKRHARLEESHKAQQYYFDAAEAEAWMSEQELYMMSEEKA
KDEQSAVAMLKKHQILEQAVEDYAETVHQLSKTSRALVAAGHPESERIGMRQSQVDKLYA
GLKDLSEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFR
EFARDTGNIGQERVDAVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQIL
AASYELHKFYHDAKEILGRIDDKHKKLPEELGRDQNTVEALQRMHTTFEHDIQALGTQVR
QLQEDAARLQSAYAGDKADDIQKRENEVLEAWKMLLDSCEGRRVRLFDTGDKFRFFSMVR
DLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARK
HYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYVS
SREIGLSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERRRKPP
SPEPLPQPAEDSESPQQWDGKGEQISQNGLPSDQDSPRATDTVDGGEIVNGVVEQRTSSK
EPSPTASPSSNRKARGSIQAATLPAKPQDTSSTQIEGVLHRKHEWEGHNKKASSRSWHNV
YCMINNQEMGFYKDSKNASQGIPYHNEIPVSLKEAVCEVALDYKKKKHVFKLRITDGNEY
LFQAKDDEEMNTWIQAISLANTWDKSEVSPSSQSTPASSRAQTLPTSATVAGDSSPGKRD
REKDKEKRFSLFGKKK
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagcagtagcgacagaattagaccatatggagattcaacatcagtatagcgac
gtcaacaaccgttgggacgcagacgagtgggacaatgagaacagctctgcccggctcttt
gaacgatcccgtatcaaagccttggcagacgaacgtgaagctgtacaaaagaagactttc
acaaaatgggtgaactcgcacttggcgcgtgtatcctgccgaatcacagacctgtacatg
gacctacgcgatggccgcatgctaatcaaactgctggaagtgctttctggggagagactt
cccaagccaacaaagggaagaatgcgtatccactgcctggagaatgtcgacaaggccctt
cagttcctcaaagaacagagggtgcatttagagaacatgggatcacatgatattgtggat
gggaatcacagactgacgcttggtcttatttggaccatcattctcaggttccagattcaa
gatatcagagttgagactgaagacaacaaagagaagaaatctgccaaggatgccttgctg
ctgtggtgccagatgaagactgctggctatcaaaatgtcaacatacgcaacttcaccact
tgctggagagacggcatggctttcaacgcgcttattcacaaacataggcctgacctgatt
gattttgataagctgaagaaatccaacgttcactacaatctgcagaacgccttcaacctc
gcagagcaacaccttggtctcaccaagctcctggacccagaagatattagtgtggaccag
cctgatgaaaagtccatcatcacgtacgtggtaacatattaccactacttctccaagatg
aaggctttggctgtagaaggaaaacgaattggaaaggtgcttgacaatgccattgagact
gagaagatgattgaaaagtatgagtcgctggcttctgacctcctggagtggatcgagcaa
accatcattatcctgaacaatcgcaagtttgccaactctctcgttggtgtacagcagcag
ctacaggccttcaacacgtaccgcacagtggagaagccccctaagtttacagaaaagggc
aacctggaagtgctgcttttcaccattcagagcaagatgagagcaaacaaccagaaagtg
tacatgcccagagaggggaaactcatctctgatattaacaagacctgggaaagactggaa
aaagccgagcatgaacgggaactggcactgaggactgagttgataaggcaagagaaactg
gaacagctggcccgccgttttgaccgcaaggcagccatgagggagacctggctgagcgag
aatcagcggctcgtctcacaggacaactttggatatgacctgcaggcagtggaggccgcc
accaagaagcacgaagctattgagactgacattgcggcctatgaagaaagagtggaggca
gtcctggctgtggccagggaacttgaagccgagaactaccatgacattaaacgcatcaca
gccaggaaagacaacgtgatccggctttgggagtaccttctggagctgctcaaggctcgg
cgccagcgactggagatgaacctgggcctgcagaaggtcttccaggagatgctttacatt
atggactggatggatgagatgaaggtcctcttgctgtcccaggattatggaaagcacttg
cttggcgtggaagatctactgcagaaacacactctggttgaagctgatattggtattcag
gcagacagagtgaaggcggtcaatgcatctgctcagaaatttgcaagtgatggagaaggt
tacaagccatgtgacccccaggttatccgtgaccgtgtggcccacatggagttctgttat
caggagctgtgccagctggcagtggagcgcagggcacgtcttgaggaatcgcgtcgcctc
tggaagttcttctgggagatggcagaggaggagggttggatcagagagaaggagcagatc
ctgtcgtccgatgactacggcaaagacctgaccagcgtgttgcgcctcctgagcaaacac
aaggccttcgaggacgaaatgagcggccgatacactcacctacagcagacaatacgagaa
ggagagggaatgatctctgatgaccactttggttctgacaagataagagagcggatcacg
gacattcaggagcagtgggccaatctggagcagctatctgccatcaggaagaaacgcctg
caggaggcctccaatctttaccagttccaggctgatgctgacgacgttgacacttggatg
ctcgacgtcctccggatcgtttccagcagcgacgtgggccacgacgagtactccacccag
tcactggtaaggaaacacaaagatgtggctgaagagatcgccagttaccgtcctgtcatc
gacaccctggaggagcagtccaaggccctacccgaagagcatgcccagtccccagaagtc
ttgagcaggctgtccgggattgaggagaggtacaaagaggtcaccgagctcaccaggttg
cgcaagcaagctctgcaagacgctctggccctttataagatgtccagcgaggctgatgcc
tgcgagctctggatagatgagaaggaacagtggttgatcagcatgcagatcccagagaaa
cttgaagatctggaagtaatccagcacaggtttgagagtttggaaccggaaatgaataat
caggcttcccgtgtggctgtggtcaaccagattgctcgccagctgatccacagtggacat
cccagcgagaaagaaatcaaagcccagcaggataaacttaataccagatggagccagttc
cgtgatttggtggaccaaaagaaagattctctcagttctgcattgggtgttcagaactac
cacctggaatgtaacgaaaccaaatcatggatcagggagaagaccaaagtcattgaatcc
actcaggagctgggcaacgacctggctggagtcatggccttgcagagaaaactgacagga
atggaaagagaccttgcagccatcgaagacaagctgagcgacctgcagaaggaggctgaa
aggctggccgcagagcacccggaccaggctcaagccataatgggtcgtctggcggagatc
acagatgtctgggaggagatgaagactaccctgaagaaccgtgaggagtccctgggggaa
gccagcaagcttcagcagttcctgcgtgacctggatgacttccagtcctggctctcgagg
acccagaccgccatcgcctcagaggacatgcccaacaccttgacggaagcagagaagctg
ctcacgcagcatgaaaacatcaagaatgagatcaacaactacgaggaggactatcagaag
atgcgtgacatgggcgagatggtcactcaaggtcagacagatgcccagtacatgttcttg
cgccagcgcctgcaggccctggacactggctggaacgagctgcacaagatgtgggagaac
agacagagtctgctgtctcagtcccacgcctaccagctgttcctcagagacacaaaacaa
gcagaagcattcctcaataaccaggagtatgtgttggcacacactgagctgcccaccacc
ctggagtctgcagaggctgcaattaagaagcaggaggacttcatgaccaccatggatgcc
aatgaggagaagattaatgcagtggtggaaacgggcaggagacttgttagtgacgggaac
atcagcgctgacaagatccaggagaaggtggactccatagatgacaggcataaaaagaac
cgtgaggctgccagtgaactcctgatgagactcaaggacaacagagacctgcagaaattc
cttcaggactgccaggagctgtccctttggatcaatgagaagatgcttacagcgcaggac
atgtcatacgacgaagccaggaacttgcatagcaaatggctgaaacaccaggcattcatg
gccgagctgcagtccaacaaggagtggttggacaaaattgaaaaggacggaatgcagctt
gttgcagagaaaccggagactgagatggttgttaaggagaagctgtcatcccttcacaaa
atgtgggacgacctggaatctaccacacagaccaaggcacagtgtctcttcgatgccaac
aaggcagagctgttcacccagagctgtgctgaccttgacaagtggctgatgggtctggag
ggacagatccactccgacgattacggcaaagacttgaccagcgtcagcatcctgttaaag
aaacagcagatgctggagaaccaagtggaggtgcggaagaaagaggtggaggagctgcag
agccaggcccaggtcctgagtctggaaggtaaagacacagacgaggtggacagcagaagg
caggtggtggagcagaagttcaatgagctactggcgccgctccagcagaggaagagctat
ctcatggcctccaaggagattcaccagttcaacagagatgtggaggacgagattttgtgg
gttgaagaaagaatgccaattgcaacttccacagaccatggtaacaacttacaaactgta
cagcttcttatcaagaaaaatcagactcttcagaaggaaatccaaggccatcagccacgt
attgatgacatctttgaaaggagccagaatattctcactgacggcagccccaatgctgaa
gccattcgacagaggctggcggggctgcaggagctgtggaatctcatgatcgaggagaca
gagaaacgccacgcccggctggaggaatcccacaaggctcagcagtactacttcgacgct
gcagaggccgaagcttggatgagtgaacaggagctgtacatgatgtcggaagagaaggcc
aaggatgagcagagcgcagttgcaatgctgaagaaacaccagatcttggagcaggctgta
gaagattatgctgagacagtgcaccagctctctaagaccagccgggcattggtagcagct
ggacatcctgaaagtgaacgtattggcatgcgacaatcccaggtggacaaactctatgcc
ggattgaaggacctgtctgaggagaggaggggcaagctggacgagaggcatcggctcttc
cagctgaacagagaggtagacgacctggaacagtggatcgcagagagggaagtggtggcc
gggtcacacgagctgggacaagactacgaacacgtcactatgctgcaagaacgtttccgt
gagtttgcacgtgacaccggcaacatcgggcaggagcgagtagatgccgtcaaccacatg
gcagatgagttgatcaattccggacattccgacgctgccacgatcgcagagtggaaggac
ggtctcaatgaggcctgggcagatctcctggagctcattgacaccagaacacagatcctg
gccgcctcttacgaactgcacaaattctatcacgatgccaaggagatcctcgggcgcatt
gacgacaaacacaagaagttgcctgaagagctgggacgagaccagaacacagtggaagca
ctccagcgaatgcacacaacgttcgagcatgacatccaggccttgggcacacaggtgaga
cagttgcaagaggatgctgcccgtcttcagtctgcctatgcaggagacaaggctgacgat
atccagaagagggagaatgaagtgctggaagcctggaaaatgctgctggattcctgcgag
ggccgtcgggtccgactgtttgacactggagacaagttccgctttttcagcatggttcga
gacctcatgctgtggatggaggatgtcatccgtctgatcgaggcccaggaaaaacccagg
gatgtttcgtcggtcgagttactgatgaataaccaccagggtattaaagcagagattgat
gcccgtaacgacagttttactacctgcattgagcttggcaagtctctcctggcacggaaa
cactacgcatcagaggagattaaagagaagttgttacagctgaccgataagagaaaagac
atgattgacaagtgggaagacagatgggaatggctaagactgatactggaggtgcaccag
ttttcccgggatgctggtgtggcggaagcctggctgttggggcaggagccctatgtgtcc
agtcgagagattgggttgagtgtggatgaggtggagaagctgattaagagacacgaggcc
tttgagaagtcggcagctacttgggaagaaagattctctgcactggagagactgacgaca
ctggaattactggaagttcggaggcaacaagaggaagaggagaggaggaggaagcccccg
tcaccagagcccctcccccagcctgcagaggactcagagtcaccacaacagtgggacgga
aaaggagagcagatctctcagaatggattgccgtcggaccaggattctccacgggcgaca
gatactgttgatggaggtgaaattgtgaacggagtagtagagcaaaggaccagctcaaaa
gagcccagcccgactgcctccccgtcatcaaaccgcaaagccagaggttccattcaggca
gccacgctgccagctaaaccacaagatacatcctctactcagatagaaggggttctacat
cgcaagcacgaatgggagggacacaataagaaggcatccagcagatcctggcacaatgtt
tattgtatgataaacaaccaagaaatgggcttctataaagattctaagaacgccagtcaa
ggcattccataccacaacgagattccagtcagcttgaaagaggccgtctgcgaggtggcc
ttagactacaagaagaagaagcatgtctttaaattacgaataactgatggcaatgagtac
ctgttccaagccaaagacgatgaggaaatgaacacttggattcaggccatctcgttagca
aacacctgggataagtcagaggtgtccccgagcagccagagcactccagcctccagccgc
gcacagacccttcccactagtgccaccgtggcgggcgactcaagccctggcaagagggac
agggaaaaggacaaggaaaagagattcagcctgttcggcaagaagaagtaa
DBGET
integrated database retrieval system
