Polyodon spathula (Mississippi paddlefish): 121316274
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Entry
121316274 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: PR domain zinc finger protein 1-like
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121316274
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
121316274
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-C2HE
zf-met
B129_C2H2-zf
zf-BED
zf-C2H2_FBX41
Motif
Other DBs
NCBI-GeneID:
121316274
NCBI-ProteinID:
XP_041107188
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Position
5:complement(71666224..71682791)
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AA seq
810 aa
AA seq
DB search
MCGSAQRFPAASQHSLDILSAEXDHSTGESTMKLNMEGADMTKWTEAEFEEKCTYIVNDY
TWEPSTDGGNCVKAEASLPRNLTFKHAPNSKEVIGVLSREYIPKGTRFGPLVGEAYTADT
VPKNANRKYFWRIYSNGEFHHFIDGFNEEKSNWMRYVNPAHSQQEQNLAACQNGTNIYFY
TVKPIPANQELLVWYCPEFAERLHYPPSGELMMMKLKQSFMDAKQHVTEPDGVSQKGTGK
KEHSVREILRMTSKEPSEPQTTPTKSLEDSPRKPSPERLFFPRVVYPVRPHINEDYLKAN
AIYGLDHPNHMTRSPIQSSATPSPSARSSSDNSPRSSPGIIHSPPIPSSEEYKEGFPYTN
GLYTRDSYAGYTPPSHLSPAFLPPYNPHPYSRFLLPHYPVGCSSLNGLGAGPAGGTGAGV
NGLNSFNRFPRMYPLYNNLLAGGSLSQHMLNPSALPGMIPSEAARRLLLSSEPHRDLLIP
APNSAFSATGHQDKLSSPSSSSSPTTSTAVTSSEHCMPTKSTSAMLERNEEAAMNLSKMK
RNMTGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFT
QLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKLCPAKFTQFVH
LKLHKRLHTRERPHKCLHCHKTYIHLCSLQVHLKGHCLAAPGPGVRSLEELNLVNEEIDK
FDLSDNADRLEEVESMDVESVVEKQILNLLWREVDIKASFHKSIGNGLLSSSSGLYEPTN
KTSVIKLPHSSPQPLLPVKVKRETIEPMEH
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctcagctcagcgtttcccagctgcctcacagcatagcttggatattttaagc
gctgagnnagatcactcaacaggagagagcaccatgaaattgaacatggagggtgctgac
atgacaaagtggaccgaagcagaatttgaggagaagtgtacgtatattgtcaatgactat
acctgggagcccagcacagacggtggaaactgtgttaaggctgaagcctcacttccaaga
aacttgacgttcaagcacgcaccgaactccaaagaggttattggcgtcttaagtagggag
tacatccccaagggaactcgctttgggccactggtaggagaggcctacacagctgacaca
gttcccaagaatgcaaacagaaagtacttctggcggatctattccaatggtgagttccac
cacttcattgacggcttcaacgaggagaagagtaactggatgcgttacgtgaacccagca
cactcgcagcaagagcagaaccttgctgcctgtcagaacggaacaaacatttacttctac
acggtcaagcccatcccagccaatcaggagctgctggtgtggtactgcccagaattcgcc
gaacggctacactaccctccttctggggaactcatgatgatgaaactcaagcaaagcttt
atggatgcaaagcagcatgtgacagagccagacggagtcagtcagaaaggcacaggaaag
aaggagcacagtgtgagggaaatcctccggatgaccagcaaggagcccagtgaaccccaa
acgactcccacaaagagtttggaagactcccccaggaagcccagtccagaacggctcttc
tttccccgggtggtgtacccggtccgcccccacatcaacgaagactacttgaaggccaat
gccatttacggcttagaccaccccaaccacatgacccgctcccccatccagtcttcagcc
acccccagcccctcggcccgcagcagctcggacaacagccctcgcagcagcccaggaatc
attcactcccctcccatcccctcatctgaggaatacaaagagggcttcccttacacaaac
ggactctacaccagagacagctacgcaggatacaccccacccagccacctttccccggct
ttcttgcctccatacaacccccatccttattccagattcctgctacctcactacccggtc
ggctgtagcagcctgaatgggttgggtgctggtcctgctggtggcactggcgctggtgtg
aacggattgaacagtttcaaccgctttccaaggatgtaccccctgtacaacaacctgctg
gcagggggcagtctctcgcagcacatgttgaacccatcagccctgcctggcatgatccct
tccgaggccgcccggcggctcttgctctcctctgagcctcacagggaccttctcatccca
gcgcccaacagtgccttttctgccaccggccaccaggacaagctgtccagcccaagcagc
agcagctcccccaccaccagcacagctgtcacctcctcggaacactgcatgcccaccaaa
tctacctcggccatgctagaaaggaatgaagaagcagccatgaacctgagcaagatgaag
cgcaacatgaccggctacaagacccttccctaccccttgaagaaacagaacggcaagatc
aagtacgagtgcaacgtctgcagcaagacctttgggcagctatcaaacctaaaagtccac
cttcgagtacacagtggagaaaggccctttaagtgccagacctgcaacaaaggattcaca
cagttagcacatctacagaagcactacctggtccacactggagagaaaccacatgaatgt
caggtttgtcacaagcgtttcagcagcaccagcaatttaaagacacatcttcggctccac
tctggagagaagccttaccagtgcaagctgtgcccggccaagttcacccagttcgtccac
ctgaagctgcacaagcgtctgcacacccgtgagcgcccccacaagtgcttgcactgccac
aagacctacatccacctctgcagccttcaggtccacctgaagggccactgtctggccgct
cccggccccggcgtgcgatccctggaggaactgaaccttgtcaatgaggagatagacaag
ttcgacctcagtgacaatgcagaccgactggaggaagtagagagcatggacgtggagagt
gtggttgagaagcagatccttaacctgctctggagggaggtggacatcaaggcctccttc
cacaagagcatcggaaacggactgctctcatccagcagtggcctttatgagcccactaac
aagacgtcggtcataaagttgcctcacagtagcccacagccacttttacctgtaaaggtc
aaacgagaaacgatagaacccatggaacattaa
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