Polyodon spathula (Mississippi paddlefish): 121316306
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Entry
121316306 CDS
T07273
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121316306 (tarbp1)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121316306 (tarbp1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
121316306 (tarbp1)
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
121316306 (tarbp1)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121316306 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
121316306
NCBI-ProteinID:
XP_041107253
LinkDB
All DBs
Position
5:complement(74443565..74474235)
Genome browser
AA seq
1629 aa
AA seq
DB search
MNSVLVDALLLQCRDPCALLEILSWDSKCDSIPERETVDALHLAIKKVRSLQQQQEFEVG
DKVGDNLTVKDRPFRKKLEDIVCSRCLPLLSKLCYTEEQNSGALSRNAGLMRALCDLISC
CADLCGNDLTEKLATVAVPVLLSSGDNESLEVTSGCHFDTDTAIEVIACTLPFLRPEQIH
VVDKVKSAAVACIKTREDAVVSKVVVKLLFSLLNNSHLKKSGVIHGIWEDLNAWQAVDNS
PAATTRILLCLTALSDYLLPSADTDGTESIDLRASEGFWEVVQKGLTHRDNVSRKRALYL
LKRSVAVSEEMKSAFQSCQETDNAVSLFWWSPERNRPIVDFWEDYMLIMETLDETQIHIV
MPVLHKINKLIEATISESQDCPIFHISWLICMYRRMFDSENKAVMKEGVLHLLDLHVMKY
PVFSQGFAEFIVGPFMDILSESTLFNRSADQAIGSCPEIGVKLQTFLVTFISSLPEDDKG
KFLLQMVENLANRHWCAVPILFISQALAQVTGCRAFGVEGLHALREVLRSTMITHQVLMR
GAAQCYLLQTALNLTDVQMVTLEDVANFIQHFKTDESLSRGTLIWTQLCDWLRVNDSVFK
PVQGVSVSQPGRPAVSVYVQHLVEAYMKVPAGEGNSCFMPDWFEAELVAKMVLLASDVEE
KQRLESETHKPKQKGLEHLLHPLLDALRRLGTNVYLPVLKTDKSLQLLFKLLHISHTSSS
PKRHDTVLTILQDSILSTTDEVLEYILRRLTSELCLLSDLDRCCLYMSVLRELVKLYSVV
GWRRGSRLWSFIKSLTKNSLLNLQANSTEQDPQLVTQVQKVVSMSSLAWVCEVASHNTEL
QIDSTDAVKAIINYISSAKLNQTLMKPAACVESQCPEDGATLQGWGRVAAQHVHDQWACL
HFVLNKCAKLLPSLSGSQADGDLKNSMPAISCPSMTLQCAVEALTILPSDQVLPVLSCMK
ILVPKIWSSDASLCVESMNLAWKVVKDLNNNPQDFWTTLEAFIQFVFDANLLRITTEDSC
LITTKVKEIASKLIDMSHTKTGVFNTLMKHCCQTWMPSVCDGDGPVDDPFTSALNHMELF
TEACVYGPVFRRDQRLIQDVHAFIQQLGEHCAANLAITSDNRDDQYPRVCAINFLCHLDP
LNQLHKTFMEQLALRLLKKDEEVGKSKVRYYTNSLQHRVKNRLWQTLLVLLPKLEKTFVM
GILDKVYQAGFCNNQASVKYLIEWFLMLTLCYYPEQLHTFWDCFRYDQDKSKTSICTFLS
VLTHFDILLDNVIDKRTHLKKALDVILLWCFNHNFAVRLYALLALKKVWNVCRTTCSEDV
EFKVLAPVIEACLQQVEHMQGSGNAMKNWQRIQEHFFFGTFHPLKDYSIETIFYTFPSLS
ELAGNEWIPLWKFSELVEFPTDSSVSLNNPRKELGNLETGDWVQQDKGECEYESQWIDVQ
KKIIPWKNSIPDQDLELLYQERAARLGKFSNALIVVASLIDKPTNLGGLCRTCEIFGASA
LVVSGLHYVNDKQFQSLSVSSERWLPLVEVKPPQLINYLQQKTAEGYTVVGVEQTANSQS
LTEYSFPEKTLLLLGNEREGIPANLLQHLAVCVEIPQHGVTRSLNVHVSGALLIWEYTHQ
QMNRHKKTM
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgttttagttgatgctcttttactgcagtgccgcgacccatgcgctctgctc
gagattttaagctgggattcaaaatgtgacagtataccagaaagagagaccgtggacgct
ttgcatcttgctatcaaaaaagtaaggagcctgcagcagcagcaggagttcgaagtaggg
gacaaagtgggtgataacctcacagtaaaggatagaccttttcgtaagaagctggaggat
atcgtttgcagtcgatgtttgccgctgttgagtaaactttgttatacggaggagcagaac
agtggtgctcttagtagaaatgccggtctgatgcgcgctctctgtgacttaatcagctgc
tgcgccgacctgtgtgggaatgatctaactgaaaaactcgccactgtggctgtacctgtg
ctcctgtcatccggcgataacgagagtctggaagtgacaagcggctgccactttgataca
gacacagctattgaggtgatagcctgtacactaccattcctgcgtcccgagcagattcat
gtggtggacaaggtgaaaagcgcagctgtcgcttgcataaagacacgcgaggacgcagtc
gtgtcaaaagttgtggtaaagctactgttttctctgttaaataacagtcatttgaagaag
tcaggcgtaatccatgggatctgggaggatttaaacgcgtggcaggcggtagataacagc
ccagcagccacaacacgcattttgctttgtctgactgcactttctgactacctgcttccc
agtgcagacacagatggaacagaaagcattgacctgcgtgcttccgaagggttctgggag
gtggtgcagaaagggttaacgcatagggataacgtgtcgcgaaaaagggctttgtatttg
ctgaagagatctgtagcggtttcagaggagatgaaaagtgccttccagagttgccaagaa
actgataatgctgtcagcctgttctggtggtccccagagaggaatcgtccgattgtggac
ttttgggaagattacatgctgataatggagaccttggatgaaacccaaattcatattgtg
atgcctgttttgcacaagataaacaaactaattgaggcaactatttcagaaagccaagat
tgcccaatcttccatatctcctggctcatctgtatgtacagaaggatgtttgatagtgaa
aacaaagcagtgatgaaggaaggcgtcttgcatcttttggatcttcacgtgatgaaatat
cctgtgttttcacaagggtttgctgagttcattgtcggcccattcatggatattctttct
gaaagcacactgtttaacaggtctgctgaccaggcgattgggagctgccctgaaatcggt
gtgaagctgcaaacatttttagtaacatttatctccagtttgccagaagacgacaaaggg
aagtttttgctgcagatggttgaaaacctggccaataggcattggtgtgctgtgcctatt
cttttcatctctcaagcattggcacaggttactggctgcagagcctttggggtggaaggc
ctgcacgctcttagagaagttttgcgttccactatgatcacacatcaagtcctgatgagg
ggagcagcccagtgttaccttctccagactgctttgaacttgacagatgtgcaaatggta
acccttgaagatgttgcaaacttcatacagcattttaaaacagacgagtctttaagtaga
ggaactctaatctggactcagctttgtgattggctgcgtgtcaatgacagtgttttcaaa
cctgtgcaaggtgtatctgtctctcagccaggcaggcctgcagtgagtgtgtatgtacag
caccttgtggaggcgtacatgaaggttcctgcgggagaaggaaacagctgctttatgcca
gattggtttgaagctgagcttgttgctaaaatggttcttttggcttctgatgtggaggag
aaacagaggctggagagtgaaacacataaaccgaagcagaaaggactggagcatctttta
caccctcttcttgacgctctgcggagactcggcactaatgtctacctgcctgtcctgaag
actgacaagagcctgcagcttctcttcaaactgctacacatctcgcacactagcagcagc
cccaagcgccatgatactgtcttaactattttgcaagattccatactttccaccactgat
gaggttctggaatatattcttcggaggctcaccagtgagttgtgtttgctttcagacctg
gaccgctgctgtttgtatatgtccgtcttgcgcgagctggtgaagctgtactctgtggtg
ggctggagaaggggatcccgcctctggagtttcattaaatcattaacaaagaactctctt
ctgaacctccaagcaaacagcactgagcaggacccacagctagtgacacaagttcagaaa
gtcgtcagcatgtcctctttggcctgggtgtgtgaggttgccagtcacaacacagagcta
cagatagactcgactgatgctgtcaaagcaataataaactacatctcatctgcaaagcta
aaccaaacattaatgaagcctgcagcctgtgtggagagtcagtgtccagaagatggcgcc
acattacaaggctggggcagagtggcagcgcagcatgtgcacgatcagtgggcctgtttg
cattttgtattgaacaaatgtgccaaactcctgccttcgttgtcaggcagccaagcggac
ggagatctgaagaattccatgcctgctatttcctgcccctctatgactctgcagtgtgca
gtggaagccctgactatcttgccctctgaccaggtccttcctgtgttgtcttgcatgaag
atacttgttccaaagatttggagctcagacgcatcactgtgtgttgaatctatgaacctg
gcttggaaagttgtcaaagaccttaacaacaatccacaggacttttggacaacccttgaa
gctttcatccaatttgtctttgatgccaacctccttcgtatcactaccgaagattcatgc
cttattactacaaaagtgaaagagatagcttctaaattaatcgacatgtctcacacaaag
acaggagtctttaacacactgatgaaacactgctgtcagacgtggatgccctctgtttgt
gacggagatggtcctgttgatgatccattcacaagtgctctaaatcatatggagcttttc
actgaggcttgtgtttatggacctgttttcaggagagaccaacggttaattcaagatgtg
catgctttcatccagcagcttggagaacactgtgctgcaaatttagctataacaagtgat
aaccgagatgaccaatatccacgggtctgtgccattaacttcttgtgccacttggatcca
ttaaaccagctgcataaaacattcatggaacagcttgctctcagactgcttaaaaaggat
gaagaggtgggtaaatctaaagtgcgatactacacaaattctcttcaacacagagtcaag
aacagactgtggcaaacgctccttgttcttcttccaaaacttgaaaagacgtttgttatg
ggaatccttgacaaggtgtaccaggctgggttctgtaacaaccaggcatctgtgaagtac
ctgatcgagtggtttctcatgctgactctctgctactaccccgagcagcttcacactttc
tgggactgcttccgttacgatcaagacaagtctaaaaccagcatctgcacatttctttct
gttttaacacactttgatatcctgcttgataatgtcattgacaagaggacacacctgaag
aaggctctggatgtcattctgctctggtgtttcaatcacaattttgcggttcggctgtac
gccttgttggctctgaaaaaggtctggaatgtgtgcagaacaacttgctctgaagatgtg
gagtttaaagttttggcaccagttatagaggcgtgtctgcaacaagtggaacacatgcag
ggttcaggaaatgctatgaagaattggcagagaattcaagaacatttcttttttgggaca
tttcatccacttaaggactacagtatagagacaatattctacacctttcccagcctgtcg
gaacttgcgggcaatgaatggattccattgtggaagttttcggaactagtggaatttccc
actgactcatcagtgtcattgaataatcctcggaaagagcttggcaacctggaaacagga
gattgggttcagcaggacaaaggggagtgtgagtatgaatcccagtggatagacgtgcag
aagaagataatcccctggaagaacagcatccccgatcaggacctggagctcctgtaccag
gaacgggctgccaggctggggaagttcagcaacgctctcattgtagtggcttcgctgatc
gacaaaccaactaacctgggaggtttatgtcgaacatgtgaaatcttcggggcttctgct
ttggttgtcagtggcctgcattatgtaaatgataagcagttccagtctctcagtgtttca
tctgaacgttggcttccccttgtggaggtaaaaccacctcagctgattaactatctacag
cagaagacagcagaaggctacactgtcgtaggtgtggaacagacagctaacagccagagt
ctcacagagtatagctttcctgagaaaacgttactgttgcttggtaatgagcgtgaaggg
atcccggcgaacctgctgcagcacctggctgtgtgcgtggaaatccctcagcacggcgtc
acgcgatctctcaacgtccatgtgagcggcgctctgctcatctgggagtacacgcaccag
caaatgaacaggcacaagaaaaccatgtga
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integrated database retrieval system
