Polyodon spathula (Mississippi paddlefish): 121316326
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Entry
121316326 CDS
T07273
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121316326 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121316326 (msh2)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121316326 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
T3SS_needle_reg
Motif
Other DBs
NCBI-GeneID:
121316326
NCBI-ProteinID:
XP_041107317
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Position
5:complement(76541202..76587939)
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AA seq
932 aa
AA seq
DB search
MAVQPKQSLSTDSVAEHGFLSFYFSMPEKPDTTVRLFDRSDYFTVHGKDAQFAAKEVFKT
NGVIKTIGSGSRRLESVCLSKANFESFVRDLLLIRQYRVEVYKNKAGSKASREHDWQLAY
KASPGNLTQFEEILFGSNDSSTAAGVVGVKLSMVDGQRLVGVGYVDSTLRRLGVCEFTDN
DQFSNLEALLVQIGPKECVLPSGETAGDMGRLRQVVQRGGILITDRKKAEFSTKDIVQDL
NRLLRAKKGEQVSSAALPEMEKQVAMSSVSAVIKFLELLSDESNFGSFELTTFDLSQYMR
LDNAAVQALNLFQASLDDTTGSQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN
LVESFMEDSELRQNFQEDLLRRFPDLNRLAKKFQRQNCTLQDCYRLYQAVGQLPNLVLAL
ERYGGNHQMLLNAVFISPLNDLVSDFIKYQEMIETTLDMDQVEHHEFLVKPSFDPNLSEL
REKMDSLEKSMQSALSSAARELGLEAGKTVKLESSTQLGYYFRVTCKEEKSLRNNKKFTT
LDIQKNGVRFTNSKLSASNEEYMKSREEYEEAQNTIVKEIISIAAGYVEPIQTLNDVMAQ
LDAVVSFAHVSNGAPIPFVRPVMLEKGQGRLVLTASRHPCIEVQDDVAFIPNNVTFQKDK
QMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCESAEISIVDCILARVGAGDSQLKG
VSTFMAEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCLFA
THFHELTALAEEVATVNNLHVTALTTDSTLTMLYRVKQGVCDQSFGIHVAELASFPKHVI
ENAKEKALELEEFQTVSKSEECDEGPATKRRCREKEEGEQIIEEFLSKVKALPISEMSGE
AIKQELKNMKAEVLKKNNSFVNEIIARSKTTA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagagcctgtccacggacagcgttgcagaacatggctttctc
agcttttatttctccatgcctgaaaaacccgacaccactgtcaggctgtttgatcgcagt
gattattttactgtgcacgggaaagatgcacagtttgctgcaaaggaggtattcaagact
aacggtgttatcaagaccattggttcagggagccggagactggagagcgtgtgtctcagt
aaagcaaattttgagtccttcgttagggatctcctccttatccggcagtacagggtggaa
gtttacaagaacaaggctggcagcaaggcgtccagagagcacgactggcagctggcatac
aaggcctctccagggaacctcactcagtttgaggagatcctgtttggcagcaacgactcc
tccacggcggcaggtgtggtgggggttaagctgagcatggtcgacgggcagcggctggtg
ggggtgggttacgtggactccaccctgaggcggctgggcgtgtgcgagttcacagacaat
gaccagttctccaacctggaagccctgttggtgcagatcggacccaaggagtgtgtgctg
ccgagtggggagactgccggggacatgggcagactcagacaggtagtgcagcgagggggt
attctcatcacggaccggaagaaggcagagttcagcaccaaggacatcgtgcaggacctg
aaccgactgctgagagccaagaagggggagcaggtctccagtgctgccctgcctgaaatg
gagaagcaggttgccatgtcatctgtgtctgctgtgatcaagttcctggaactgctgtcg
gatgagtccaacttcgggtcatttgagctgactacctttgacctgagtcagtacatgagg
ctggacaatgccgcagtccaagcgctcaacctgtttcaggcctccttggatgacaccact
ggatctcagtctctggcgggtttgttaaacaaatgtaaaacccctcaggggcaacgactg
gtgaaccagtggatcaaacaacccctcatggacaagaaccgcattgaggagaggctgaac
ctggtagagtccttcatggaggactcggagctgcgacagaacttccaggaggaccttctg
cgcagattccctgacctcaaccggctggccaagaagttccagcggcagaattgcaccctg
caggactgctaccggctttaccaggctgtggggcagctccccaatctggtgttggcgctc
gagagatacggtggaaaccaccagatgctgttgaacgcagtgtttatctcccctctgaac
gatctggtcagcgatttcatcaagtatcaggagatgatcgaaaccaccctggacatggat
caggtggagcaccacgagttcctcgtgaagccttcgttcgatccgaatctgagcgaactg
cgggagaaaatggacagcctggagaagagcatgcagtctgccttgagcagcgcggccaga
gagctcggtctcgaggctggcaagactgtaaagctggagtcaagcacccagctggggtat
tacttccgagtgacttgcaaagaggagaaaagccttcgcaacaacaagaagttcaccacc
ttggacatccagaagaacggagtgaggttcaccaacagtaaattgagcgccagcaatgaa
gagtacatgaagagcagagaggagtatgaggaggcccagaacaccatcgtgaaagagatc
attagcattgcagcaggttatgttgagccgatccagaccctgaatgatgtgatggctcag
ctggacgcggtggtcagcttcgctcacgtgtcgaacggagctcccatcccgtttgtccgg
ccggtcatgctggagaagggtcaggggcgcctcgtgctgacggcctccagacacccttgc
attgaggtccaggacgacgtggccttcatccccaacaatgtgaccttccagaaggacaag
cagatgttccacataataactggccctaacatgggaggaaagtcgacgtacatccgccag
gcaggtgtgatcgtgctcatggctcagattggctgcttcgtgccctgtgagtcagcggag
atcagcattgtggactgcatcctggctcgggttggagcaggggacagccagctgaagggc
gtctccacctttatggcagaaatgttggagacggcagccatactgcggtcggccacagag
aattctctgatcattatcgacgagctgggaagaggcacatccacgtatgatggatttggc
ttggcatgggccatctctgagtacattgccaccaagattggggctttctgcctctttgcc
acgcactttcatgagctgacggccctggcggaggaggtggcgactgtgaacaatttgcac
gtgactgcgctgacgactgacagcacgcttaccatgctgtaccgcgtcaaacaaggagtc
tgtgatcagagtttcgggattcatgtggcggagctggccagctttccgaagcacgtcatc
gagaatgccaaggagaaggccttggagctggaggagttccagacagtctcaaaatctgaa
gagtgcgatgaggggcccgccactaagaggcgctgtcgagagaaagaggaaggtgaacag
atcattgaggagttcctttccaaagtcaaggcgctgcctatttcagagatgtcaggagag
gcaatcaaacaagaactgaagaacatgaaggcagaggttttaaagaagaacaacagcttt
gtgaacgaaatcatcgcccgatccaaaaccactgcataa
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