Polyodon spathula (Mississippi paddlefish): 121316375
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Entry
121316375 CDS
T07273
Name
(RefSeq) neuronal PAS domain-containing protein 4-like
KO
K26457
neuronal PAS domain-containing protein 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121316375
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121316375
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Gene cluster
GFIT
Motif
Pfam:
bHLH_NPAS4
PAS_3
PAS_11
PAS
PAS_4
Per3-like_PAS-A
DUF6679
Motif
Other DBs
NCBI-GeneID:
121316375
NCBI-ProteinID:
XP_041107386
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Position
5:complement(20615838..20621137)
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AA seq
812 aa
AA seq
DB search
MKMTVCCEYCRNATGAKPRIPLCKSTCFTAAEEINQRIPYKPFRSTKGASKARRDHINAE
IRNMRALLPISEDEKESLPYLHTMSVICSYIRKSLFCQDLRKDTEEPFPLPYEDFLQALP
GFIVAVSSEGKLIYISENVTEYLGYSMVDLFQGEGFYDMIKSADLHIAKTHLQSNSLLET
ERSFVCRMHTSKSFRLRHGSSCAVLVRGRFQALPGTPPSPSSSGAVFVALCTPTVNWLQD
SETHSYLQRFQSHHLPDMKFTDTPDSVLYHLGYSAEEMTGRSWYSLLHPDDLSFAASQHK
LLLKGDEECHVEMVVRLQCKDLSWTWVYIRALLDSAKQSVTCINYIISETEATFLRQQID
CQSEHGAGVIYQKSVNEYQNNAPAPSTNQNHKEKPAKSRKRQLDNDILVKEPRNKASRIS
EPSIYTYYVSCVSCVNSSPAVPCYTPSTPPYSPQSDCSSFLQEDSRSLSFSNTNFLVDTY
GAVEGLLPPAGNSPSYYSSELYAVPNQAVASEPLPAIEDSAFSLGSFSGSQVMTEELSPS
ASGPPSHDFSSCTNDVHLVPDCMTMEEVSGGVSDCCFHFESFSIPGNFQGNLNSYMPGQS
SAEASVVPGSLLTPVSSPTAQNSFQYSEKERTEISILARQISCLASSFDAYQSIDQVLNI
PGDFTNVQEPQGDQQQFCSWTDSVMLEPESVLNEGVFDSILKDLATVSAKETDPCSPSAS
CADPEQTPMSAVSYSMESNQLLLDTNTTEPAGLSIMPLEDDLPLDEFSTVHPAFDSFMMR
SVCDGYSNELPQLNEYLHHSLQQDGSVEESMY
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgacggtctgctgtgaatattgcagaaatgcaactggtgccaaacccaggatt
ccactatgcaaatccacatgttttactgcagccgaggaaatcaaccagaggataccatat
aaaccgttcaggtcaaccaaaggagcatccaaggcgaggagggatcacatcaacgctgag
atcaggaacatgcgggccctcctcccaatttcggaagatgagaaagaaagcctgccctac
ctgcacaccatgtctgtcatttgcagttacatcagaaagtctctgttctgtcaagacctg
cgcaaggacactgaagagccttttcccctcccgtatgaggattttctgcaagcactgcct
ggctttattgtggctgtgtccagtgaagggaaattgatttacatttcagagaatgtcact
gagtacctcggctactccatggtggatctattccaaggagaaggtttttatgatatgatc
aaaagtgctgatctgcacattgcaaaaacccatctacaatcaaactcattgttggaaaca
gaacgctcatttgtttgccggatgcacacttccaaatcgtttcgactcagacatggcagt
agctgtgcagtgctggtcaggggcaggtttcaagctctcccaggaactccaccctcgccc
tccagctccggagctgtctttgtggcactgtgcacccccactgtgaactggttacaggac
tctgagactcattcctacctgcagcggtttcaaagtcaccacctccctgatatgaagttt
actgacactccagacagtgtactttatcacctcgggtattctgcagaggaaatgactggc
cggtcttggtacagcttgctacacccagatgaccttagctttgcagcatcccagcacaaa
ctcttgttgaagggagatgaagaatgtcatgttgaaatggtggtgagactgcagtgcaag
gacctttcctggacctgggtatacatccgagccctgctggattcggcaaagcaatctgtg
acctgtataaactacattatcagtgaaacagaagccacatttctgcgtcaacagattgac
tgtcaatcagaacacggagcaggagtcatttaccaaaaatctgtgaatgagtatcagaat
aacgcaccagcaccaagcaccaatcagaaccacaaagaaaaacctgccaagagccggaag
agacagctggataatgacatcctggttaaagagcccaggaacaaggcatcccgaatttca
gagcccagcatttacacatattacgtttcttgtgtttcttgtgtgaacagctctccagca
gttccatgctatactccctccactccaccttacagcccccaatcagactgctcatctttc
ctgcaggaggactcaagatcactgtccttttcaaacaccaatttccttgtcgacacctat
ggtgctgtagaagggttgttgccgccagctggaaactctccctcatactactccagtgag
ctttatgcggtgcctaaccaggctgtagcttcagaacctttgccagccattgaggacagt
gccttcagcctaggcagctttagtggatctcaggtcatgacagaagagctgtctccctca
gccagcggtcccccttctcacgatttctcaagctgcactaatgatgtccacctggttcct
gattgcatgacaatggaggaggtttcaggaggtgtatcagattgctgttttcattttgaa
agcttcagcattcctggaaactttcaaggcaacttgaactcctatatgccaggccagagc
tctgctgaagcttctgtggttcctggaagcttgttgaccccagtttcatcaccaacagca
cagaacagctttcagtatagcgagaaagaaagaacagagatcagcattcttgcaaggcag
atctcctgcctagcttcaagctttgatgcatatcagagcatagaccaagttctgaacatt
ccaggtgacttcacaaacgtgcaagaaccccaaggagaccaacagcaattctgcagctgg
acagactcagtgatgcttgaaccggaatctgtcttgaatgagggagtctttgacagcatc
ttgaaggatttggccacagtttcagcaaaggaaactgatccctgctccccgtctgccagc
tgtgctgatcctgagcaaactcccatgtctgctgtctcatacagcatggaaagcaaccag
ctcctcctggacacaaataccacagagccagctggcttgtcaattatgccgcttgaagac
gacttacccttggacgagttctccacagttcacccagcattcgactccttcatgatgagg
tctgtgtgtgatgggtacagcaatgagttgcctcaactcaatgaatacctgcaccatagc
ctccagcaagatgggagtgttgaagaatccatgtactga
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