Polyodon spathula (Mississippi paddlefish): 121316679
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Entry
121316679 CDS
T07273
Name
(RefSeq) homeobox protein SIX2 isoform X1
KO
K19472
homeobox protein SIX2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121316679
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
121316679
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
HTH_3
YdaS_toxin
Phage_mat-A
HTH_72
Motif
Other DBs
NCBI-GeneID:
121316679
NCBI-ProteinID:
XP_041107666
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Position
6:complement(1902804..1908965)
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AA seq
289 aa
AA seq
DB search
MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRS
IWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAETKERYEENNENSNSSSHNPLTSSMNGNKTILGSSEDEKTPSGTPDHTPSSPALLLTS
NSGLQPLHGLAPPQGPSAIPVSSADAMHHHHLHDVILNPMSSNLVDLGS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgcttccaacttttggttttactcaagagcaagttgcgtgcgtttgcgaagtg
ctccaacaggggggcaacatagaacgccttggccgctttctgtggtccctacctgcctgc
gaacaccttcacaagaacgaaagcgtcctcaaagccaaggccgtcgtggcgttccacagg
ggcaatttcagagagctgtacaagattctggagagccaccagttctcgccacataaccac
cccaaactgcagcagctctggctcaaagcgcactacgtcgaggccgagaagctccggggc
cgccctcttggggcagtggggaagtaccgggtccgcagaaagttccctttgccccggtcc
atctgggacggcgaggagaccagctactgctttaaagagaagagccggggcgttctgagg
gagtggtacacccacaacccatacccgtccccacgagagaaaagagagctagccgaggcc
actggcctcaccacaacccaagtcagcaactggttcaaaaacagaagacagagggaccga
gcggcagaaaccaaagaaaggtacgaagaaaacaacgagaattcaaactccagcagccac
aatccattgacttcttccatgaatggaaataaaacaattttggggagctctgaagacgag
aaaactccctcgggaaccccggatcacacaccgtcgagccctgctttactgctaacgtcg
aactctggactccagcctctgcacgggctggcgccgcctcagggtccgagcgcgatcccg
gtttccagcgcagacgctatgcatcatcaccatttacacgatgtcatcctgaaccccatg
tcgtccaacctggtcgaccttggctcttaa
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