Polyodon spathula (Mississippi paddlefish): 121316719
Help
Entry
121316719 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121316719
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121316719
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121316719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121316719
NCBI-ProteinID:
XP_041107762
LinkDB
All DBs
Position
1:27491960..27517544
Genome browser
AA seq
670 aa
AA seq
DB search
MADEDWENEAGTSSAPLFFPNKNIMDTFGNKDDFKNNMFTTGNENSSWNNDHDKSRGFGR
RGGFGNQGGTDCENGGGSFGNRGGGFRGSSFESGGGRGREGARGFGRGRGGFRQDNGDNS
FGSSCGFGGRRGGFRSRSGDDDGEGGGRGRFGRGGSRGGYKGRDEEVLSSEKAPFRSDRE
DEGGENAGPKVNYVPPPPPEEEDMIFAHYETGINFNKYDDILVDVSGNAPLAIMSFEEAG
LCDTLSRNISKSGYVKPTPVQKHGIPIVLGGCDLMACAQTGSGKTAAFLLPILQQLMKDG
VAASKFSELQEPEAIIVAPTRELINQIYLEARKYAYGTCVRPVVVYGGISTGYTIREVLK
GCNLLCGTPGRLMDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPEMRKLVASPGMPPKEE
RQTLLFSATYPEDIQKLAADFLKPGYIFLAVGQVGGACSDVEQNVLQVSQYSKRDKLVEM
LQTTGTERIMVFVETKRKADFIATFLCQEKIPTTSIHGDREQREREQALGDFRTGKCPVL
VATSVAARGLDIEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNTGKAISFFDPESDSPIAR
SLVKVLSDAKQEVPAWLEEVAFSAYGTAGFNPRGNVFASVDSRKGPGGNKSFGIRESSQP
AIAVDEDAWE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaagactgggaaaatgaagctggaacatcgagtgctccattgtttttccca
aacaaaaatataatggacacctttggcaacaaagatgatttcaaaaacaacatgtttact
acaggtaatgaaaacagttcctggaacaatgaccatgacaaaagccgtggctttggaaga
aggggtggctttgggaatcaaggaggcactgactgtgaaaatgggggaggcagttttgga
aaccgtggtggagggttcaggggttcttcgtttgaatcaggcggtggacgaggcagagaa
ggagcccgtgggtttggaagagggagaggaggattccggcaggataatggagacaatagt
tttggcagctcctgtgggtttggaggcagaagaggaggatttagaagtcgttcaggtgat
gacgatggtgaaggaggaggacgaggaagatttggccggggaggatctcgaggtggttat
aaaggaagggatgaagaagtactttcttcagaaaaagcaccatttaggtctgatagagag
gatgaaggtggtgaaaatgcaggtcccaaggtgaattatgtaccccctccacctccggaa
gaggaagatatgatttttgctcattacgagaccggaatcaactttaacaaatatgatgat
atcctagtggatgtatctggaaacgctccactggcaataatgtcttttgaagaggctggc
ctatgtgacactttaagcaggaatatcagtaaatcgggatatgtcaagcccactccagtt
cagaagcatggcattccgatagttttaggaggctgtgacttaatggcatgtgcgcagaca
ggatctggaaaaactgcagcatttctgttgcccatcttgcaacaattgatgaaggatgga
gttgctgctagtaagttcagtgaactacaggagcctgaagcaataatcgtagctccaaca
agagagctaataaaccagatctatttggaggctaggaaatacgcgtatggaacctgtgtg
aggccggttgtagtgtatggcgggataagcactgggtacacaatacgggaagttttgaaa
ggatgcaacttattatgtggaactccaggaagactcatggatatcattggtagagggaag
gtcggactaagcaaactaaggtacctagtactggatgaagcagatcggatgttggatatg
ggatttgagccagaaatgcgcaagctggtagcatctcctggcatgcctccaaaggaagaa
cggcagacacttttgtttagtgccacttacccagaggatattcagaagttagctgcagac
tttttaaagcctggctacatattccttgcggttggtcaagtaggaggtgcttgtagtgat
gtggagcaaaatgtgctgcaagtctctcaatattcaaagagagacaagctggttgaaatg
cttcagaccacaggcactgaacgcatcatggtttttgttgaaactaaaagaaaagcagac
ttcattgcaactttcctctgtcaagaaaaaatcccaaccacaagtattcacggggatcga
gaacagagggaaagggagcaagcacttggagatttccgcactgggaagtgtcctgttctg
gttgcaacctctgtggctgctagggggctggatattgagcatgtgcagcatgttgtaaac
tttgacctcccgtcttccattgacgagtatgtccaccgtattggtcgcacagggcgctgt
ggaaacactggcaaagcaatatccttcttcgacccggagtctgactctcccatagctcgc
tccctggtgaaggttctttctgatgctaaacaggaagttcctgcttggctggaggaagta
gcattcagtgcttacgggactgctggcttcaatccaagaggaaatgtgtttgcatcagtg
gactcccgtaaaggtcctggtgggaataaaagctttggaattcgtgagtcaagccagcca
gcaatcgctgtggacgaagacgcttgggagtga
DBGET
integrated database retrieval system
