Polyodon spathula (Mississippi paddlefish): 121316776
Help
Entry
121316776 CDS
T07273
Symbol
srfb
Name
(RefSeq) serum response factor b isoform X1
KO
K04378
serum response factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121316776 (srfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121316776 (srfb)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
121316776 (srfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
121316776
NCBI-ProteinID:
XP_041107885
LinkDB
All DBs
Position
6:complement(8207450..8247672)
Genome browser
AA seq
600 aa
AA seq
DB search
MLPSQTGSAPAANRSGSGKGNAGRGLRVIGSGVATSLAKAGLVGVSTTSISGGVVRSGNG
AVMLGGNGAAGGSRGGQRPGNGAGLAGLQGAGAGVLGSMGSVIGGQGVSRFDPDRETSAM
VFSGSEADSDSVDDDDLAVLGQGSISRGVKRERAEMETGVIGQGAGTPTGGYGGVSGGVA
GAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETG
HVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSE
SESIGETKDTLKPAFTVTSLPGTSTCNPTAPTTSTTMQVSSGASFPITNYLAPISASSNT
NSITSANGTVLKTAATSGGVMQLPSGFTFMSAGTPLPPGTPTIPISQLQSHSLSIQGQPG
QGIAGPQGQQTVFRFPASVSLAGGTVTQQLQAIQVHSSTQHSTGTSDSGPENSQASPGCA
VSLPATIVTSSVPTTMAGHMMYPSPHTLMYASTPALSDGSLAVLNAFSQAPSAMQVSHGQ
VQEQGGVPQVFLTGPPGTVQIPVSAVQLHPMVIGQQSSNSSHLTELQVVNLDAAHNSKSE
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctacctagccagactgggtcggcaccagcagcgaacaggtcaggatcgggcaagggt
aacgcgggtcgcgggttaagggtgattgggagcggggttgctactagcttggcaaaagca
gggttagtcggagttagtactactagcatcagcggcggggttgtgcgatcaggcaacggg
gcagtgatgttggggggtaacggggcagcagggggctctcgcggagggcaacggcccggg
aacggggcaggactggcgggattgcaaggagcaggagcgggggtgctcgggagcatgggg
tcagtaattggggggcaaggggtaagtaggtttgaccccgaccgggaaacctcagctatg
gtgttcagcggctcggaggctgattcggactctgttgatgacgatgacctggcagtgttg
ggtcaggggtccatcagcagaggggtaaagcgggagagagctgagatggaaactggagta
attgggcaaggagccgggacgccaacgggaggctacggcggggtgtcaggtggggtggct
ggggcaaaacctggcaaaaagacgcgagggagagtcaagattaaaatggagtttatcgac
aacaaactgaggcgatacacgactttcagcaaaaggaagactggcatcatgaaaaaggcg
tacgagctgtcaacgctgacgggcacacaggtgttgctgctggtggcaagtgagacgggc
cacgtatacacattcgcgactcgcaagcttcagcccatgatcaccagcgagacaggcaag
gcactgatccagacctgccttaactcccccgactcgcctccccgctccgaccccagcaca
gaccagagaatgagcgccactggcttcgaggagacagacctcacctaccaggtgtccgag
tcagagagcattggagagaccaaggacaccctaaagcctgctttcacggtgaccagcttg
cctggcacctccacctgtaaccccacggcgcccaccacctccaccaccatgcaggtgagc
agcggagcctccttccccatcaccaactacctggcgcccatctctgccagcagcaacacc
aacagcatcaccagtgccaacgggacggtgctcaaaacggcggccacctctgggggtgtc
atgcagctccccagcggcttcaccttcatgtcagcaggcactccgcttcctcctggcacc
cctaccattccgatcagtcagctacagtcgcactcgctgtctatccagggtcagccgggc
cagggcatcgcggggcctcaagggcagcagacagtcttccgcttcccagcgtccgtttca
ttagcagggggcacagtgactcagcagctgcaagcaatccaggtccactcctcaacgcag
cacagcaccggcaccagtgacagcgggcctgagaactcgcaggcctcccccggctgtgca
gtcagtctcccagccacaatcgtgacttcatctgttcccacgacgatggcaggtcacatg
atgtaccccagcccccacacgctgatgtacgcctccacgcccgctctgtctgacggcagt
ctggcagtcctcaacgcattctcccaggccccctctgccatgcaggtctcccacgggcag
gtgcaggagcaaggtggagtccctcaggtgttcctcacaggccctccaggaacggtacag
atacctgtctcagctgtgcagttacatccaatggtcattgggcagcagtcgagtaacagc
agtcacctgacggagctgcaggttgtgaacctcgacgctgcacacaactccaagagcgag
tga
DBGET
integrated database retrieval system
