KEGG   Polyodon spathula (Mississippi paddlefish): 121316847
Entry
121316847         CDS       T07273                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420  Nucleotide excision repair
pspa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121316847 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    121316847 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pspa04121]
    121316847 (ercc8)
   03400 DNA repair and recombination proteins [BR:pspa03400]
    121316847 (ercc8)
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     121316847 (ercc8)
DNA repair and recombination proteins [BR:pspa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      121316847 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_IFT122_1st Beta-prop_HPS5 WD40_RFWD3 Nucleoporin_N Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 121316847
NCBI-ProteinID: XP_041108055
LinkDB
Position
1:complement(28552773..28568623)
AA seq 402 aa
MLGLLSARQTGLDDPLRLKRAEVTRRVLSLELNKDRNVEQIHGNGVNTLDIEAIEGRYML
SGGADGVIVIYDLENSSRKPQYTCKSVCTVGRSNRHKHQFSVETVQWYPHDTGMFTSSSF
DKTLKVWDTETLLPAEVFHFEGNVYCHNMSPIARKHSLIAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEVLSVKWSPRYEHILATASTDSRVRLWDVRKASGSLFTLDQHNDEKSKASSEA
ANTAHNGHVNGLCFTSDGLCLLTTGTDDRMRLWNSSTGENTLVNYGKVSNESRKGLKFTV
SSGCSPEFVFVPCGGTIAMYALYTGELITMLRGHYNSVDCCEFHPDFQDLYSGGKDCNIL
AWVPTPRKPAIENEDEESKKTGGQSSFNPAFQDAWSSSDEEG
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgttggggttgctgtcagctagacagactggattagacgatcctcttcgcctcaaacga
gctgaagttacgagaagggtgctcagcttggagttaaacaaagaccggaatgtggaacag
attcatgggaatggggtgaacactcttgatatcgaagctattgaaggacgatacatgttg
tcaggtggggcagatggagtcattgtcatatatgaccttgagaattccagcaggaagcca
cagtatacatgcaaatcagtatgtacagtgggcagatccaatcgccataaacaccagttc
agtgtggagacagtccagtggtatccacacgatactggcatgttcacatcaagctctttt
gataagactctgaaagtatgggacactgagactttacttccagctgaggttttccatttt
gaagggaatgtatattgtcataacatgtctccaatcgcaaggaaacatagtttgatagca
gttggtaccaaagaccccaaagtacagctttgtgacttgaagtctggttcccgtatacac
attctacagggtcacaggggtgaagtgctgtctgtgaagtggtcccctcgatacgaacac
attctggcaacagcaagcactgacagcagagtgcgactctgggatgtgaggaaagcttcc
ggaagtttgttcacattagaccagcataatgatgagaagtccaaagcctcttcagaggca
gctaacaccgcacataacggtcatgtcaatgggctgtgctttaccagcgatgggctctgc
cttctgaccactggcacagacgaccgcatgagactctggaacagctcaactggggagaac
acactggttaactatggcaaagtctccaatgaaagccgtaaaggcctgaagtttactgtc
tccagcggttgcagtccggagtttgtgtttgtaccctgtggtggtactattgcaatgtat
gccctttatactggtgaactgataaccatgctcagggggcactataacagtgtggactgc
tgtgaattccatcctgatttccaggatctatacagtgggggcaaggactgcaacatcctt
gcctgggttccaacacctcgcaaacctgctattgaaaatgaggatgaagaatccaaaaaa
actggaggacagtcgagcttcaatcccgcttttcaagatgcttggagcagcagtgatgag
gagggatga

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