Polyodon spathula (Mississippi paddlefish): 121316896
Help
Entry
121316896 CDS
T07273
Symbol
nphp1
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-1
KO
K19657
nephrocystin-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121316896 (nphp1)
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
121316896 (nphp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_1
SH3_9
SH3_2
RXT2_N
BSP_II
SH3_10
hSH3
Motif
Other DBs
NCBI-GeneID:
121316896
NCBI-ProteinID:
XP_041108136
LinkDB
All DBs
Position
6:complement(15168111..15179422)
Genome browser
AA seq
681 aa
AA seq
DB search
MPPSKRSGPLQTVQRSTDDLKKQVGSLLKDIQHPDAAQPAKRTEAFQRSIQLQKSVKETL
TTLHKLKKADEPAPVGNYDQRKQDEEKRLLKMLQQLQTVAELLNADKVYHHKDAEEPGTS
QLKEDEEEEEEEDDDDDDEEEEEEEEEEEDGEDSVEEQPTINQYISISDFVAQQDGDLTI
KKGEVLTILNKKPDGWWVAQDSRGNQGEVPKTYLEKKKEEEEEEEEEEEEEEEEVYCIDP
DILNTTLYSSVNLQHFLXNQINATDVLSTMGTIPTGFRPSTLSQLLEEGKRFKSSYYIQP
ELSHSQLAFKDLLWDPEQGSVRARLARVSLNLTLWSCRMIPLPGAGIYVLSRHVRLCVFD
GTRVLSNIHTVRATTQLKNPKTWTFSPRVSGILPSLLDGDCFIKSSSQSPELGVLFELGV
TYIRNATGERGELSCGWAFLKLFDASGVPVPYKTYDLVVNGGTPYEKGVEVDPSLTRRAS
NSIFQQMMTSRRHPKLLVKLKSPNTKTRTTLNLLPDTLVGSTCCIHLLAFYRQILADALL
RDRISVQNAELICSPVLATFPQIMEQADLMDALRSVWSEKESSLKRSEKRDSEFLKSTFK
QIYHDSVYSLLHYTALPPLRWADEEAEASRWKVIADFLRLNREKNGSLFSLLSPEMAHEA
FDISEISYDFLGMAREAAATA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccaccatcgaagagatcaggtccgttgcaaactgtacaaagaagcacagacgacctt
aaaaagcaggttggcagtttgctcaaagatattcagcatccagatgctgctcagcctgct
aaaagaactgaagcttttcaaaggagtattcaattacagaaatctgttaaagaaactttg
actactttacataagttaaagaaagctgatgagcctgcaccggtgggcaattatgatcaa
agaaaacaagatgaagaaaagagattgctaaaaatgctccaacagctgcaaactgtggca
gagctgttgaatgcagataaagtatatcatcacaaagatgctgaagaaccaggcacttct
caactaaaagaagatgaggaggaggaggaggaagaagatgatgatgatgatgatgaggag
gaggaggaggaggaggaagaagaagaagatggggaagattctgttgaagaacaacctact
ataaatcaatatatttccatcagtgactttgttgcccagcaagatggagatctaactatt
aagaaaggtgaagtcctgacaattcttaataaaaaaccagatggctggtgggtagcgcaa
gactccagaggaaaccagggtgaggttccaaaaacatatctggagaagaagaaggaggag
gaggaggaggaggaggaggaggaggaggaggaggaggaggaagtgtactgtattgatcct
gatattctgaatacaaccctttacagttcagttaacttgcaacatttcttgtaaaatcag
attaatgcaactgatgtactgtctaccatgggaacaatcccaactggatttagaccatct
acattgtcacagctcctagaagaaggaaaaagatttaagtcaagttactacattcagcct
gagttaagtcattcacagttggcttttaaagacctgctttgggaccctgaacaaggaagt
gtacgtgccaggttggcccgggtatcattgaatttgacactatggagctgtagaatgatc
cccctgcctggggcaggtatttatgttctcagtagacatgtccgactttgtgtttttgat
ggaaccagagttttgagcaatatccatacagtcagagccacaacccaactaaagaaccct
aaaacctggaccttttctccaagagtatcaggtattcttccaagccttctggatggagat
tgttttataaagtccagttcccagtctccagaactaggagttttatttgaacttggggtc
acctacattcgaaatgcaacaggggagcgtggggagctgagctgtggttgggctttcctg
aagctttttgatgccagcggagttccagttccatacaaaacatatgaccttgttgtaaat
ggggggacaccatatgagaaaggggttgaggttgacccctctttaactagaagagcaagc
aatagtattttccagcagatgatgacatcaagaagacatcctaaactccttgtcaagctg
aaatctcccaacactaaaacaaggacaactttgaacctcctccctgacaccttggtaggc
agcacatgctgcattcacttgctggcattttatagacagatccttgctgatgcactgttg
cgagaccggattagtgtgcagaatgctgaactaatctgcagccccgtgctggcaactttc
ccacaaatcatggaacaggcagaccttatggatgctctcaggagtgtgtggtcagagaag
gaaagcagtttaaagagatcggaaaagagagacagtgagtttctgaagtccacgtttaag
cagatttaccatgacagtgtgtactccctccttcactacactgctctgccccctctcaga
tgggcagatgaagaggccgaggcttctcgatggaaggtcattgcagactttctcaggtta
aacagagagaaaaacggctctctcttttccctgctgtctcctgaaatggcacatgaagca
tttgatatctcagagatatcgtatgattttctaggaatggcaagagaggcagctgctaca
gcataa
DBGET
integrated database retrieval system
