Polyodon spathula (Mississippi paddlefish): 121316943
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Entry
121316943 CDS
T07273
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121316943
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121316943
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
RuvA_C
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
121316943
NCBI-ProteinID:
XP_041108269
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All DBs
Position
6:17376884..17385071
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AA seq
617 aa
AA seq
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MSRQQSKIERFLKLGYSEKDIVRVLESLRQDALTNDILEELIKTGHKAEAEKARSSSPQL
VSRGCSPQEPVKPRPVAEEEDSDPCSVLRPIVIDGSNVAMSHGNKEVFSCHGIQLAVLWF
WERGHRDITVFVPSWRKEQPRPETPITDQNILHELEKRKILVYTPSRRVKGKRVVCYDDR
YIVKLAYESDGIIVSNDNYRDLQSEKQDWKRFIEGRLLMYSFVNDKFMPPDDPLGRSGPH
IENFLRKTPIIPEHKWQHCPYGKKCTYGVKCKFYHPERSNQPHMSVADELRAKTKSTSPK
PFKEDEQPLNVRAMSANQEEFLVAFNTAASYGQDAKMSVCNGLQLSAPLSHEEAHHRYSP
NHLLDSQKQSASPSYLQYSTAFQNPGCDEGFESMEAKFSTMFIQGKPDKQNNFCSIEYDR
SSCSNWCDGPSHCKTDCARSHRCIPTGIAPQPCFCYRNPPQKMPQSCGSHSQVSGSLTPS
PGLYANFFPTHNSENHKQKSCDLTAPPSNQAPHAVQEQQQHHYHFNQQKYSSLGHSATLN
NSWGNGQMVSPATNQAYTFSSEQRFSLTEQKKYVRSQLCAIFPQGVVDQVMSLYPNVSDR
THLISLIYQFKSNHTCF
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacaacagagcaaaatagagcgtttcctcaaactgggctactccgagaaagac
atcgtgagggtgctagagagcctccgacaggatgccttgaccaatgacatcttggaggag
ctgattaaaacaggccataaggctgaggcagagaaagcaaggagctccagcccacagctt
gtgtcccggggttgcagcccccaagaacctgtgaagccgagaccagtggcagaagaggag
gatagtgacccctgcagtgtcctgaggcctatcgtcattgacggcagcaatgttgccatg
agtcatggaaataaagaggtgttttcttgccacgggatccagctagcagtgctgtggttc
tgggaaagaggccaccgggatatcacagtgtttgtcccctcctggaggaaggagcagccc
agaccagagactcccattacagaccagaatatactccatgagctggaaaagagaaagata
cttgtgtacaccccatcacgccgcgtcaaggggaagagagtggtgtgctacgacgaccgc
tacattgtgaaactggcctacgagtcagatgggataatcgtatcaaacgataactatcgt
gacctgcagagtgagaaacaagactggaaaagatttattgaaggcaggcttctgatgtac
tcttttgtaaatgacaagtttatgcctccagatgatcctttgggtaggagtggaccccac
attgaaaactttttgaggaagacacctatcattcctgaacacaaatggcagcattgtcca
tatggaaagaagtgtacatatggtgtgaagtgcaagttctaccatcccgaaagatccaat
cagccacacatgtcagttgctgatgaactccgagccaaaacaaagtcaacttcacccaaa
ccctttaaagaagatgagcagcctcttaacgtcagagcaatgtctgctaatcaggaggag
tttctggttgcatttaacactgctgcttcttacggacaggatgccaaaatgtctgtgtgc
aacggccttcagttatctgcgcccttgagccacgaagaagcccaccacagatattcaccc
aatcatttgctagacagtcaaaaacaaagcgcaagtccctcctatttgcagtattctact
gccttccaaaatcccgggtgcgatgaaggatttgagtccatggaagccaagttctccact
atgttcattcaggggaagccagacaaacagaataacttctgctccattgagtacgacagg
tcctcatgctcaaactggtgcgacggcccaagccattgtaaaacggactgtgctcgttca
cacaggtgcatccccactggaattgctccacagccttgtttctgctacaggaacccccca
cagaaaatgcctcagagctgcggcagccattcgcaggtgtcaggaagtctaacaccaagc
cctggtttatatgcaaactttttccccacgcacaattctgaaaaccacaaacaaaagtcc
tgtgatttaacagcacctccaagcaaccaggctccacacgcagtacaagaacagcagcaa
catcattatcattttaaccagcagaagtattcttcactcggtcacagcgccactctaaac
aacagctggggaaacggacagatggtgtctccagcaacaaaccaggcttacactttctct
tcagagcagagattttcactcactgaacagaaaaagtatgtcagaagccagttgtgcgcc
atctttccacagggagtagtggatcaggtcatgtctttgtacccaaatgtttcagacaga
acacatctcatctcattaatctaccaatttaaaagtaatcacacctgtttttaa
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