Polyodon spathula (Mississippi paddlefish): 121316953
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Entry
121316953 CDS
T07273
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121316953 (shprh)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121316953 (shprh)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121316953 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
PHD
zf-C3HC4_3
GIDE
VPS18_RING_C
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
121316953
NCBI-ProteinID:
XP_041108304
LinkDB
All DBs
Position
6:18247213..18270235
Genome browser
AA seq
1683 aa
AA seq
DB search
MSSRRKRAPPVKVDEETKKKLCWNMHEDLKNDNVPGPSSSAAPLTVEDDNTLEEGCSIAV
KDRISSPQSFLGLTDPGESLCIPSPSSIPINLKVLSPCELGPVWKALIGECRLHPKSAHV
FPGGIQDLSFTLRMTNDQLIVCTEESDFSSKDVYSVECSLDSTVLEDLMWLKKRRVVQLY
QIPNEDSDFLKVGIFLLESGLGKPEFLSERSGRIRKANQLIQKLMELFYDFIIPDLQEDE
KEESDTDLERQNIEELYDYVRRAHQNEAHSPQEDIQHPALIPVLRPYQCDAVNWMLKREN
YRSSQTHEKSLHFLWQEVATLCGKTLYYNPYTGCLIREFPVAGTEWPGGILADEMGLGKT
VEVLALILINTWQGVGKHGLTLPEGRSVNYFVPPPPTDGKKKQHYKKSDLKPKEKVVYPT
LRVMLLTAIKEMRVGKGASVNAIFGYIRATYRYDLQRNRRLIKKTLEKLVAEELVEQVKG
RGLAGSFKLGKKYKETKKLGTVAKQKSNPPDSKPDCRLRRATRKHARVEKDVLTDAENKD
ELLQSDPESIKPMNPGLEEHNYCGQSKDRVSKDSTLREGVCEPLDKTVDQTVVKTQDNLL
IEADDTQSHSALDMINNKCESKVKQNEGCPEMQESGSHCSTNAPCPQSTAVLPFNMSVYR
FECICGELGLVDYKARVQCLNCFLWQHAECVNYKQEDLGTKPFYCPHCLVAMTPVPTGAT
LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFIQPHSLAEQDVVITTYDVLRTE
LNYVDIPHSNSEDGRRFRNQKRYMAIPSPLVAVEWWRVCLDEAQMVECPTAKAAEMALRL
RAINRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKHWWEQLLYRPYRRGNPLLLYSLIAR
LMWRSSKKDVLDQIQIPPQTEEIHWLHFSPVEGHFYHRQHEVCSQDALVKLRKISDWNLK
LGSLDRRTVNSILYPLLRVRQACCHPQAVRGEFLPFQKSTMTMEELLLSLQKKCRVECEE
AHRQLVCAFNGLAGVHIIRGEHALAAERYREVLRSSEEHKDKLKTDSLQRLHATHNLMEL
LKAHRSEIPPTLRDDLLKVEAEQLKQHYMTKSNSEVAEAQQALQPVLQNIKELKRKIHSG
SPWWLEVIQRAIQYAIDDDLVLRIQNELISNYKQQASKLSMADKFRDCRGLQYLLSTQME
HLMKSQKNVQAAVKKLEGPPSKKVIEEATICHLRPVRLPLNNCVFCKADELFTDYESKLF
AHTVKGQTAIFEEMIEDEEGLVDDRLPTTSRGLWAASEMERVMKAILSFAKARRMDAALI
EDGNTFMELFESRKKEYKLLHEYWMVLRDHVSAIDELGMATERLRVRHPDEPKPKVLHII
EPHEVEQNRMKLLNDEVVAKSQLQKKLGQLLYLTNLEKSQDKSSGEQNPEPCPICARQLG
KQWAVLTCGHCFCNECIAIIVQQYSIGTRRRAIKCAICRQTTSHKEISYVFTAETANQDE
EIPVKGSHSTKVEAVVRALKKIQLKNPDAKALVFSTWQGVLDIIAKALYDNSMEFSQING
IHKFQENLSSFKYDAKINILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHR
IGQTKPTVVQRFLIKSTIEERMQTMLKTAERSHGTASMKHSEVSVLTVADLADLFTEDTE
ALE
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagaaggaagcgggcccctccggtcaaggtggatgaggagacaaagaagaag
ctctgctggaatatgcacgaggacttaaaaaatgacaacgttcccggtcccagctcctcg
gctgcacctcttactgttgaagatgacaataccttagaggaaggatgttccattgctgtg
aaagacagaatctcaagccctcagagcttcttggggttaacagaccctggagagtcctta
tgcattccgtctcccagctccattccaatcaatctaaaggtgctgtcaccctgtgagcta
ggccctgtctggaaggccttgattggtgagtgtcgtcttcatccaaagtcagcccatgtc
tttcctggtggcattcaggacctgagtttcacccttagaatgactaatgatcagctcatt
gtgtgcacagaagagtctgatttcagcagcaaagacgtttactctgtggaatgttctctg
gacagtactgtgttagaagacctaatgtggcttaagaagagaagagttgtccagctttat
caaataccaaacgaagacagtgattttttaaaggtgggtattttcctcttggaatccgga
ctaggaaaaccagagtttctgagtgaaagaagtggaagaataagaaaggccaatcagctg
atccagaaactaatggagctcttctatgactttataattccagacttacaagaggatgaa
aaagaagagtcagatactgacctggagcggcagaacattgaagagctgtatgattatgtg
agacgtgcccatcaaaatgaagcccacagccctcaggaagacatccaacacccagcactc
atccctgtgctgagaccttaccagtgtgatgctgttaattggatgctgaaaagggagaac
tacagaagctcccaaacacatgaaaaatcactgcatttcctgtggcaagaagttgctaca
ttatgtggaaagacgctctactataacccatatacaggctgtttgatacgtgaatttcct
gtggctggcactgaatggccaggaggaatcctggcagatgagatgggtctggggaaaact
gtggaagtgctggcactcattcttatcaatacatggcagggtgttggaaaacatggccta
acgctacccgagggaaggtcagtaaactactttgtcccacctccacctacagacggaaaa
aagaaacagcattataagaagtctgacttaaagccaaaagaaaaagtggtctaccccact
ttacgggtgatgcttctcactgctatcaaggagatgagggtggggaagggggcctcagtc
aacgctatctttgggtacatccgtgccacttacaggtacgaccttcagagaaaccggcgc
ctcattaaaaagactttggagaagctggtcgctgaagagctggtggagcaggtgaaaggc
cgggggcttgccgggtcgttcaagctgggaaagaagtataaagagaccaagaaactcggg
acagttgcaaaacagaaatcaaaccctccggacagtaaaccagactgtagacttaggaga
gccacaaggaaacatgcaagggtggaaaaagatgttctgactgatgcagaaaacaaagat
gaactgcttcaaagtgacccagaaagcataaaaccaatgaatcctgggctagaagaacat
aactactgtggtcagagcaaagacagggtttcaaaagacagtactttgagagagggtgtc
tgtgaaccactagataagactgtggaccagactgtggttaagacccaggacaacttatta
atagaagccgatgacacacagagtcactcagctctggatatgataaacaacaaatgtgaa
tccaaggtaaagcaaaatgaaggctgcccagagatgcaagaatcaggttcacactgcagc
accaatgcaccttgtccacagtccacagcagttcttcctttcaacatgtctgtctatcgg
tttgaatgtatctgtggagagcttggcctggttgactataaagccagagtgcagtgtctg
aactgcttcctgtggcagcacgcggagtgcgtcaactacaagcaggaggacctggggacc
aagcctttctactgcccgcactgcctggttgccatgacgccagtgcccacaggggctacg
ctcatcatttcacccagctctatctgccaccagtgggtagatgagatcaacaggcatgtg
aggtcatcttcacttcgagtgctggtttaccaaggagtgaagaagcacggctttattcag
cctcacagtttggctgaacaggatgtggtcatcacaacctatgacgtcctgcgcaccgag
ctgaactacgtagacattcctcacagcaacagtgaagatggccgtcgcttccgaaatcag
aagcgctacatggccatccccagccccctggtggcggtggagtggtggagagtctgcctg
gatgaagcacagatggtggagtgccccactgcaaaggccgcagaaatggcactgaggctg
agagccatcaaccgttggtgtgtcagcggaactccggtacagcgaggtttagaagattta
tatggcctggttctgttcctcggagtcgacccatattgggtgaaacattggtgggaacaa
ctcctgtatcgcccataccgtcgaggaaatccccttctcctctatagcctgattgccagg
ctcatgtggaggtcctcaaagaaagatgttctcgaccagatccagattccccctcaaacg
gaagagatacactggctccacttctctccagtggaaggtcacttctaccatcgccagcac
gaagtctgctcccaggatgctcttgtgaagctgaggaagatttctgactggaacctgaag
ctcggcagtctggacagaagaaccgtcaactccatcctgtaccccctgctcagggtgagg
caggcctgctgccacccacaggctgtgcggggagagtttctgccttttcagaagagcacc
atgacaatggaggagctgctgttgtccctgcagaagaaatgcagagtggagtgtgaggag
gcacatcgccagcttgtatgcgctttcaatgggctggctggggtccatataatcagaggt
gaacatgctttggcagcggagcggtacagggaagtactgcggtcctcagaggagcacaaa
gacaaactcaaaactgattctctacagcggctgcatgctacacataacctaatggaactg
ctgaaagcacaccgttctgagattcccccaacccttcgagatgatctgctgaaagtagag
gcagagcagctcaaacagcactacatgaccaaatccaactctgaagttgcagaagcacaa
caggccctgcagccagtccttcagaacatcaaagagctcaaacgcaagattcactcagga
tctccctggtggttggaggtaattcagcgagcaatccagtatgcgattgatgatgacttg
gttcttcgtattcagaatgagttgatcagtaactacaaacagcaagccagtaaactttcc
atggctgacaagttccgtgactgcagagggctgcagtatttgctgagcacacagatggag
cacttgatgaaatcccaaaaaaacgtgcaagctgctgtcaagaaactggagggtcctccc
tctaagaaagtcattgaggaagccaccatttgccaccttcgccctgtgaggcttcccctc
aacaactgtgtgttttgtaaagctgatgaactcttcacagattatgaatccaagctcttt
gcccacactgttaaagggcagacggccatctttgaggagatgatagaagatgaagaaggc
ctcgttgatgaccgtctgcctacaacaagccgtgggctttgggcagcgagcgagatggag
cgagtaatgaaggccatcttgtcttttgccaaagcccggcggatggatgctgccctcatt
gaggatgggaacacatttatggagctgtttgagagccggaagaaggaatacaagttgctt
catgaatactggatggtgctgcgggatcatgtctctgcaatcgacgagttgggcatggca
acagaacgcctgcgtgtgcgccacccggatgaacccaagcccaaagtgttgcacatcatt
gaaccacacgaggtggagcaaaacaggatgaaattattaaatgatgaagtggttgcaaaa
tcccagttacaaaagaaacttgggcaacttttgtacctcacaaacttagagaaatctcag
gataaatcaagtggagagcagaatccagaaccctgccctatctgtgcacggcagctgggg
aaacagtgggcagttttaacatgcgggcactgcttttgtaatgagtgcatagctatcatt
gtgcagcagtacagcattgggacccgcaggagggcaatcaagtgtgccatctgcagacag
accacctcccataaagaaatctcctacgtgttcacagctgagactgcaaaccaggatgag
gagatccctgtcaagggtagccattctaccaaagtggaagctgtggtacgagccttgaag
aagatccagttgaagaatccggacgctaaagctttagtcttctcaacgtggcaaggtgtt
ctggatatcattgcaaaagctctttatgacaacagcatggagttttctcagataaacgga
attcataaatttcaggagaacctgtcctcgtttaagtacgatgccaagatcaacatatta
ctgcttcctctacacactggctcgaatggattgaatataattgaagctacgcatgttctt
ctggtagagcccatactgaacccagcccatgagctgcaggccattggcagagtgcatcgc
ataggacagacaaagcccactgttgttcagaggtttctaataaaatcaaccatagaagaa
agaatgcagaccatgttgaaaacagcagaaagaagccatggcaccgcctccatgaagcac
tctgaggtgtctgtgctgacagtagcagacctggcagatctgttcacagaggacactgaa
gctctggaatga
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integrated database retrieval system
