Polyodon spathula (Mississippi paddlefish): 121316974
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Entry
121316974 CDS
T07273
Name
(RefSeq) erbin-like isoform X1
KO
K12796
erbb2-interacting protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121316974
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_14
LRR_8
LRR_4
PDZ
LRR_LRWD1
PDZ_2
LRR_NXF1-5
PDZ_6
LRR_5
DUF5945
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
121316974
NCBI-ProteinID:
XP_041108368
LinkDB
All DBs
Position
1:29613035..29705229
Genome browser
AA seq
1458 aa
AA seq
DB search
MTMKRNFFRLVPCRCLRGEEEAVTALDYSHCSLEQVPKEIFAFEKTLEELYLDANQIEEL
PKQLFNCQSLHKLSLPDNDLAVLPPSIANLINLRDLDVSKNGIQEFPENIKNCKVLTIVE
ASVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMS
KLTQLERLDLGSNEFTEVPEVLEQLTGLKELWMDGNRLAYLPGVIGTLKQMTYLDVSKNN
IEMVDDQLSGCESLQDLLLSNNALQQLPGSTGSLKKLTALKVDENQLMYLPDSIGGLTSL
EELDCSFNEIEALPSSIGQFTNLRTFAADHNFLTQLPPEVGNWKNATVLFLHSNKLESLP
EEMGEMQKLKVVNLSDNRLKNLPFTFTKLSQLTAMWLSENQSKPLIPLQKEEDEDTHKTV
LTNYMFPQQPRTEDFLANSDNESFNPLLWEEQRKQRAQVAFECDEDKDERETPPREGNLK
RYPTPYPEELKNMVKTAHTIAHRLKEDESSESEKEIRQNEDTAVTVNDVGVKASGNNCAS
GKNLESNPNATVNCVLKPSELDSKDTKETSQTAALVKTSENIRARINHEDTLEDSEDLSS
DEEEMKIAELRPPLIEISINQPKVVALSKDKKDESKDADSLLDETVANSNQNNSNCSSPS
RMSDSVSLTTDSSQDTSLCTPEKEAKVMIITKIRQDDENSNQLKETALLLQNGNGSDTSL
QAILKNQQEKKVQKEAIKMSDFEFTVDEKLSLIDRGMDLNNGMEVSYNKWDEINMNISKL
SPDNMERLNTLEKTKNTVREDLKNKSLLNNNAEQAAEYYLENGNQCPTQALSNHLSGRFE
ETPSSPTKFEMVRTAAVGVTASADMSVSRSTEELSPQKRGPLGPVVKSQSVTNIEPGALK
IYHIVGDNGPHEPNAPGRVPAANVQGQNIVRSKSASLLNHQPLQVYPGSSASSSDLVSCT
KTLTKHDPNFKQQSAQAGKGPMPAGMQMPGGPQYNIQYSSSTMPKEGPWTQRTAIPPEQG
YLPPPRLQWSDSTDSYMKHTANTNYSNRNNAQASLGYSMQQRGPPRQMEMWEVNPQKDKF
MPGGPRSTLQRQSSNSSSTSMSLGDPTQPRRIAAPAGDYLTYRDIHSMGKGPLMNQGMQR
PLSARTYSIDSPNIPRPQSARPSAHEVPERTMSISDFNYSRTSPTKRSNVRVKSEHSLLD
TQEVSKVPADWRDQVMRHIEAKKLEKNVLSRSFNSNYAAVSSFHYGSSRDLHGSQGSVAF
SVADGRLSGAHMFRDEVFSPRSPGYEMVVHGHKDVSMDIMRKVPLTNGQMCPTSQPQMNC
SQVHCQPSQATMVRHPSREQLIDYLMLKVSHQPQGPSRQPHEVVQKEVHVKIEKNPELGF
SISGGVGGRGNPFRPEDKGIYVTRVQPEGPASKHLQPGDKIIQANGYNFVNIDHGQAVSL
LKTFQSTVDLIVLRDVCA
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgaagcggaatttctttcggctggtgccatgtcgctgtctgcgaggagaggag
gaggcagtcaccgcgctggattactctcactgcagcctggagcaggtgcccaaggagata
ttcgcattcgagaagaccttagaggagctctatttagatgctaaccagattgaggagctt
cccaagcaattgttcaactgccagtctcttcataaactgagtttgccagataacgaccta
gctgtattgccaccctctatcgcaaacctcattaatctcagggatctggacgtcagcaag
aatggcatccaggaatttccagaaaacatcaagaactgcaaggttttaacaatagtcgaa
gccagcgtaaatcccatttcgaaactacctgatggattcactcagcttctcaacctaacc
cagctgtacctgaatgatgcctttttggaattcttaccagcaaatttcggcaggttaacc
aaactgcagatactggagctgagagaaaaccagttaaagatgttgccaaaaaccatgagc
aagctgacccagctggagagactggacctgggaagcaatgagttcacagaagtgcctgaa
gttcttgaacaactcactggtctgaaggagctttggatggatgggaacagactggcatac
cttccaggggtaattgggacgttaaagcaaatgacctatttagatgtatccaagaacaac
attgaaatggttgacgatcagctgtcaggctgtgaaagcctgcaagacctgctgctctcc
aacaatgcactgcagcaacttccaggatccacaggttccctgaagaaattaacagcactc
aaagtggatgaaaaccagttgatgtacctgccagactccataggcggactcacatccctg
gaagaacttgattgcagttttaatgagatagaagccttgccgtcatccattgggcagttc
accaacctccggacctttgctgcagatcacaactttctgacacagctgcctcctgaggtt
ggtaactggaagaatgcaaccgtgctgtttctacactcaaacaaactggagtctctgcca
gaggaaatgggcgaaatgcagaaacttaaagttgtcaatctgagcgacaacaggctgaag
aatttaccctttacctttaccaaactgagccagctgacagcaatgtggttgtcggaaaac
cagtctaagccccttatacctcttcagaaggaggaggatgaggatacacacaaaaccgtg
cttaccaactacatgttccctcaacagccaaggacagaagatttcttggccaactctgat
aatgagagcttcaatcctttgttgtgggaggaacagaggaaacaaagagcacaggtggcc
tttgagtgtgatgaggacaaagatgagagggagacaccacccagggaggggaatctgaag
cgctacccaacgccttacccagaggaactaaaaaatatggtgaaaactgcacacactata
gcccatcgactcaaagaggatgagtcgtcagagtctgaaaaagaaataagacagaacgaa
gatacggctgttacagtgaacgatgtaggtgtaaaggcttcagggaataactgtgcaagt
ggaaaaaacctggaaagcaatccaaatgcaactgtgaattgtgtgctaaaacccagtgaa
cttgattctaaggacactaaagagacttcacagacggctgcacttgttaagacctctgag
aacattcgagctagaatcaaccatgaagacacacttgaggactctgaagacctgtcctct
gatgaagaggagatgaagattgcagagttgcgacctccgcttattgagatctctattaat
cagcccaaagtggtggcactaagtaaggataagaaagatgaaagtaaagatgctgattct
ttattggatgagactgttgcaaacagtaaccagaacaacagcaactgctcctcgccatct
cgcatgtcagactctgtgtccctgacaacagacagtagccaggacacttccctctgcact
ccagagaaagaggcaaaggttatgattataaccaagatcagacaagatgatgaaaattca
aatcagttgaaggaaacagcactcctccttcagaatgggaatggttcggacacctctctg
caggccattctgaaaaatcaacaggaaaagaaggtgcaaaaggaagccatcaaaatgtca
gattttgagttcacagtggacgagaaactgtccctcatagacaggggtatggatttaaat
aatgggatggaagtttcttacaacaaatgggatgaaatcaatatgaatatatctaagctc
tctccagataatatggaaaggttaaataccctggaaaagaccaagaacacagtccgggaa
gacttaaaaaataagtctttgcttaacaacaatgctgaacaagctgcagaatactacttg
gagaatggtaaccaatgtcctacacaggctctttctaatcatctcagtggtcgatttgaa
gaaactcccagttctccaactaagtttgagatggtgagaactgctgcagtcggtgtaaca
gcaagtgcagatatgtctgtctctaggagcactgaggaactgtccccacagaagcggggg
cctttgggacctgtggtgaaatctcaaagtgtaaccaacatcgagccaggagcgcttaaa
atataccacattgttggcgataacggaccacatgagccaaatgctcctggaagagtacct
gcagctaatgttcaggggcagaatattgtccgcagcaagtcggcatctctacttaatcac
caacccctgcaggtctaccccggctcttccgcctcttcatctgaccttgtgtcctgtacc
aaaactttaaccaaacacgatcccaacttcaaacaacaaagcgcccaagcagggaagggg
cccatgcctgctggcatgcagatgccaggggggcctcaatataacatccagtactcaagc
agcacaatgcccaaagaaggcccctggactcagagaacagccatcccaccagagcaagga
tatttaccaccccctcgcctgcagtggtcagacagtactgacagctacatgaaacacaca
gccaacacaaactactcgaaccgcaacaatgcacaggccagcttgggctacagcatgcag
caacggggtccgcccagacaaatggagatgtgggaagtcaatccccagaaagacaaattt
atgccaggtggtccccggagcaccctgcagaggcagagtagcaattcctcctccacctca
atgtctcttggagacccgacacaacccaggcgcatcgcggccccggctggagattactta
acttacagggacattcacagcatgggaaagggacctctgatgaaccaggggatgcagaga
cccctttccgccaggacctacagcatcgacagccccaacatcccccgaccgcaaagcgca
cggccatccgcacatgaggtgcctgagagaacgatgtccattagtgatttcaattattca
aggactagccctaccaagcggtccaacgtgagggtgaaatcagagcactcgctgctcgac
acacaagaggtcagcaaggtacctgccgactggagagatcaggtgatgcggcacatcgag
gcaaaaaagttagaaaagaatgtgctgtctaggtcctttaattccaattatgctgcagtt
agcagctttcactatggcagctctagggatctgcatggcagccagggcagtgttgccttt
agtgttgcagatggaagactttccggagcacacatgttccgtgacgaagtcttttctcca
agatcgccgggctacgaaatggttgtacatggtcacaaggatgtgtctatggacattatg
agaaaagtgcctttgacaaatggacagatgtgcccaacttcccagccccagatgaactgc
agccaagtccactgtcaaccttcccaggccactatggtgaggcatccctccagggagcag
ctgattgattacttgatgctcaaagtatcccaccagccccagggtcccagcaggcagccc
cacgaggttgtgcagaaggaggtgcatgtcaaaatagagaagaatcctgagttgggcttc
agtatatcaggaggcgttggaggcagaggaaatccatttcgaccagaagataaaggtata
tatgtaaccagagtccagcctgaaggacctgcatcaaaacatttgcagccaggggataag
atcattcaggccaatggatacaactttgttaatatagatcacggacaggcagtttccctg
ctaaaaacttttcagagcactgtggacctaatcgttttgagagacgtctgtgcataa
DBGET
integrated database retrieval system
