Polyodon spathula (Mississippi paddlefish): 121316986
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Entry
121316986 CDS
T07273
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121316986 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121316986 (hbs1l)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121316986 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
121316986
NCBI-ProteinID:
XP_041108388
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Position
6:complement(20187929..20244703)
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AA seq
708 aa
AA seq
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MSRHRNVRGYNYDEDLDDDDLYGQSVDDDYCISPATAAEFIYSKRDKPSVFTEPLEEEKF
EVEEQAVPVSSPSMNHEKLSEVDQAQLYSCLDQMREVLGDSVPDPILVEAVIKCRFDLQK
ALDLMLSEEGKTTPSARNHNEVSTGKAAKALVSLLRDDVVPLRPGLTTSGRSRDPPVTEI
DSEIVPKVARMTVSGKKQTMGFDVPSTEENGVLGSASRRGQVPEAVPPPVLPDAPSKVAF
SPPPSQNLSEESPTVPTPVRMSSKAKQQINIKAELEKRQGGKLLLNLVVIGHVDAGKSTL
MGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETK
TKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFDAGGQTREHGLLVRSL
GVTQLAVAVNKMDQVNWQQDRFKEISTKLGQFLKQAGFKDSDVSYIPTSGLSGENVTTKS
KEPKLTAWYEGPCLLEQIDAFKSPQRPVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQT
GDRILAMPPNESCTIKAITLHDEPIDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIK
ACTRFRARILLFNIEVPITQGFPVLLHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLT
KGQNALVELQTQRPVSLELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacacagaaatgtccggggttataactacgatgaagatttggacgacgacgat
ctatatgggcagtctgttgacgatgactactgcatttcaccggctacagctgccgagttc
atctattccaagcgcgataagccctctgtcttcacagagccccttgaagaagagaagttt
gaggttgaggagcaggctgtacctgtttcctctcccagcatgaaccatgaaaaactgagt
gaagtagatcaagctcagttgtattcgtgccttgatcagatgcgagaggtcctcggtgac
tctgtcccagatcctattctggtggaagcagttattaaatgccggtttgatttacaaaag
gccctggacctcatgttatctgaggaaggcaagacgacaccaagtgcaagaaaccacaat
gaggtctctacagggaaagctgccaaagcactcgtctccctgctacgtgatgatgtagtt
cctttgcggccaggtctgaccacatcaggaagatcaagagatccaccggtgactgaaatt
gactcagaaatcgtgcctaaagttgccagaatgactgtgtctggaaaaaagcagacaatg
ggatttgatgttccaagtactgaagagaatggggtactgggcagtgcttcccgcaggggt
caagttcctgaagcagttcccccaccagtactcccagatgctccgtccaaagttgcattt
tcacctccccccagccagaacctctccgaggagtctccaactgtgccaacccctgtcaga
atgtccagcaaagccaagcagcagatcaacatcaaagcagaactggagaaaagacaagga
ggaaagcttctgctgaaccttgttgttataggtcatgtagatgcaggtaaaagcacttta
atgggccatcttctttacttgctgggtaatgttaacaaaaggacaatgcacaagtatgaa
caagaatccaagaaggctggaaaggcttcctttgcatatgcctgggtactggatgagact
ggggaagaaagagacaggggtgtgaccatggatgttggaatgaccaagtttgagacaaag
acaaaagtgatcacattaatggatgcacctggtcataaagactttatacccaacatgatc
actggagctgctcaggctgatgtggcagtacttgtggtcgatgccagccgcggggagttc
gaggcaggttttgatgcaggcgggcagacgagggagcacgggctgctggttcgctctctt
ggcgtcacccagctggcagtcgctgtcaataaaatggatcaggtaaactggcaacaggac
aggtttaaggaaatttccactaaacttggacagttcttgaaacaagctgggttcaaggac
tctgatgtgtcctatatccccactagtgggctctctggtgaaaacgtgaccaccaagagt
aaagaacccaagctcaccgcatggtatgaaggaccttgtcttctggaacagattgatgcc
tttaagtcaccacaaagaccagtggataaaccttttagactgtgtgtgtctgatgttttt
aaagatcagggatcagggttctgtgtgactgggaagatcgaagcaggttatgtacagaca
ggggaccggatattagcaatgcccccgaatgaatcctgtacaattaaagctatcacgttg
catgacgagccaatagactgggcagcagccggagatcacgttagtctcacagtgactggc
atggatatcatcaaaatcaatgttgggtgtgtgttttgtgatccaaaggagcctattaaa
gcatgcactcgatttcgggcaaggatcctcctgttcaatattgaagtcccaataacacaa
ggatttcctgtgttgttgcattaccaaactgtcagcgaacccgccactattagaaaatta
gtaagtgttctacacaaaagtagcggagaagtgctgaagaagaagccaaagtgcttgact
aaaggtcagaatgcattggtggaactacagactcagagaccagtttctcttgaactctac
aaagactttaaagagctaggacgctttatgctgcgctatgtcggatccactatagctgca
ggcgttgtcacagagatcaaagaatga
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