Polyodon spathula (Mississippi paddlefish): 121317024
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Entry
121317024 CDS
T07273
Symbol
afdna
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04520
Adherens junction
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121317024 (afdna)
04530 Tight junction
121317024 (afdna)
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Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
121317024
NCBI-ProteinID:
XP_041108486
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All DBs
Position
6:complement(22520449..22641478)
Genome browser
AA seq
1963 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPRYSLYEVHVSGEERRLDLDEKPLVVQLNWNKD
DREGRFVLKNENDILPKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKKEKRRDKEAFPRVQ
DGDEHSLHKEDSENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRNSD
GRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAEALEKYGLERENPSNYCIARVL
LPPGSQHSDDKGASESVLDDADCPLQIFREWPSDKETLVFQLKKRPPDYVPKKARKPDEK
VPRGKSVDGSLHVPLPPEKLPYLVELSPGRGKHYAYYSYRQQEDGSDSRDKPKLYRLQMS
VTEVGSDKTDENSIQLFGPGIQPHHCDLTHMDGMVTVIPSFDAETYVDGQQIAETTMLRS
GMKVQFGSSHVFKFVDPSYDHGMTKRSMDAGPMVKGQRHKSGSVPETTFELDGDIHSGTP
LPTSKSSSRLDIERSTLSERGMVKPLVHGEQKQDYRKQESRSQDGQGPELMLPASIEFRE
SSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTCRYVLSSHYRPDMSPSERTHKVIAIVNK
MVNTMEGVIQEIPEGDQKQKNIAGALAFWMANASELLNFIKQDKDLTRVTLDAQDVLAHL
VQMAFKYLVHCLQSDLNNYMPAFLEDPEEQNPQRPKIEDVLNTLTGAMSLLRRCRVNAAL
TIQLFSQLFHFINMWLFNKLVTEPDSELCSHYWGAILRQQLGYIEAWAEKQGLELAADCH
LSRIVQATTLLTMDKYSMQDVPNINNTCFKLNSLQLQALLQNYHCAPDEPYIPPDLIENV
VAVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLEPLCQR
GYCRLTPHPRSPGTWTMYFEGADYENHFSTDSTELPMPKDPEIVTVTLKKHNGMGLSIVA
AKGAGQEKLGIYVKSVVKGGAADIDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSV
VTLEVAKQGAIYHGLATLLNQPSPMMQRASDRGRGSGKPRPKSEGFELYNNSAQNGSPES
PQTSWGEPPEPKKTSGEERLLKNRADHRSSPNVANQAQSPGGKTVYSGGPTSKITSVSTG
NLCTDEQQPSPRPEAYPIPTQTYTRDYFTFPASKSQDRMGPGPEQQWQNYGDRPPGQPDD
HHSSNMSIQRVTRSQEELCDDRVAYQPERMRQEEIVQMQQREMEYQRERGNGEHWNHQVS
SSVESSTSSQEHLNYSSSSSKAPNHKSGPGRWKTPGPTNSAPVAVSQPTQSDLLPPPPPP
PPVYYTGDFDSQADLPLPPPPPGGGQQQAIAAATAAADRKKRDEQQRWYEKEKARLEDER
DRKRREQDRKMGQVRIPPGPGVPPNLNHHHQQPPLSPMPIQHQQHQHPPPPMPLQQQQYH
PPPMMPQQPPWIEKPSSLPRAPPPPQDTVIRELLPQQQPRTIERRDLQYIVSKEDLTSGD
SLSPDPWKRDAREKMEKQQQLHIVDMLNKEIQELQAKPERTAEENDRLRKLMLEWQFQKR
LQESKQNEEDEEEEDDEDVDTMLIMQRLEAEKRARQTAVPAISVLDLLQDEERRRKQQLE
EIRKREAEEWAKQEEERRRREEERNRREAEEKRRQEEEYYNRLEAERRRQHDEAERKLLT
PDEPGLYRPPLPRDYELPPPPPSSANTPPPPPQRNTSYLKTQVVSPDTVYTAKFVSYNDE
EEDSSLAGQVKFSATRKSYGDLPPAPKPQPHQPSARPSRPVSDGIFLSNSFQLPSANANS
TAFKAGPPPPPNKPSFNPSGNSKGYNSYTGTTTAVVGSHEVYRDLRDKRVKSGQDQDDSL
TGEAPESMTFKERQRLFSQGQDVSNKVKASRKLMELENELNTK
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagtcgggaggaggagcggcgcaaactcgccgacatcattaaccactggaac
gccaaccggctcgacctgtttgagatcagccagcccaccgaggacctggagttccatgga
gtgatgcggttttactttcaagacagagttgcaggaaactttgccactaaatgtatccgg
gtgtcgagcacagccaccacgcaggacgtgattgagacgctggctgagaagttccgccct
gacatgaggatgctctcgtctcccagatattccctttatgaagtgcacgtcagtggggaa
gaacgacggctggatctggatgagaaacctctggtggtgcagctgaactggaacaaagac
gacagggaaggcagatttgtactgaagaacgagaatgacatactccccaaaaaggcgcag
agcaacgggccggaaaagcaggagaaggaaggagtgattcagaacttcaagcgcaccctc
tccaagaaggagaaaaagaaagagaagaggagggacaaggaggcctttccaagggtgcag
gacggggacgagcattccttacacaaggaggatagtgagaactcccgattggctgctgag
gtgtacaaggacatgccagaaaccagcttcacgagaacgatatccaaccctgaggtggtc
atgaagcggcggcggcaacagaagttagagaagaggatgcaggagttccgcaacagcgac
ggccggcctgattcaggggggacattgaggatctatgcagacagtttgaaaccaaatata
ccatacaagacaatcctactgtccaccacagacacggcggactttgctgttgctgaggct
ctggagaagtacggcctggaaagggaaaaccccagtaactactgtatcgctcgggtgttg
ctacctcccggatctcagcactccgatgacaaaggtgcctctgagagtgtccttgatgat
gctgactgtcctcttcagatcttcagagagtggccgagtgacaaagaaacattagttttc
cagctcaagaaacgacctccagattatgtcccaaagaaagctaggaagccagatgagaaa
gttccgagggggaagtctgtcgacgggtctctccatgtccctttaccccctgagaagctg
ccctacctggtagagctgagcccagggagagggaagcactatgcctactacagctatcgc
cagcaagaagatgggtcagactccagggataaaccaaagctctatcggttacagatgagt
gtcacagaggttggctcagataaaacagatgaaaactcgattcagttgtttggcccagga
atccagccccaccactgtgacctcacccacatggatggcatggtaacagtgatcccaagt
tttgatgctgagacctatgttgacggtcagcaaattgctgagaccaccatgctgagaagt
ggcatgaaggtccagtttgggtcttctcatgtcttcaagtttgtggatcccagctatgac
cacgggatgaccaaaaggagcatggacgctggccccatggtcaaaggacaacgacacaaa
tcaggaagcgttcctgaaacaacatttgaactggatggggacatccacagtgggactccg
ctgccaacaagcaagagttcgagcaggctggatattgagagatccacccttagcgagcgt
ggcatggtgaagcccttggtgcacggagaacagaagcaggactaccgcaagcaggagtcc
agatcccaggatggacagggaccagagctgatgctaccagctagcatagagttcagggaa
agctccgaagatgccttcctctccgctattatcaactacactaacagctctacagtgcac
ttcaagctgtcccccacatacgtactgtacatgacctgtcgctacgtgctgtccagtcac
tatcgacccgatatgagtccctccgagcgcacgcataaggtgatagccatagtcaacaag
atggtgaacacgatggaaggagtcattcaggagatacccgagggggatcagaaacagaag
aatattgcaggagctcttgccttctggatggcaaacgcttcagagctgctcaacttcatt
aaacaggataaagacctcacccgagtcacactggatgctcaggatgtcttggctcattta
gtacaaatggccttcaagtacctggtccactgtctgcagtctgatctcaacaactacatg
ccagcattcctagaggacccagaggagcagaatccacagcgacccaaaatagaggatgtt
ctgaacaccctgacaggcgccatgtcgctgctgcgtcgttgccgagtgaacgccgctctc
accatccagctcttctcccaactcttccacttcatcaacatgtggcttttcaacaagctg
gtgactgagcccgactcagagctctgttcccactactggggggccatcctccgccagcag
ctaggatatatcgaggcctgggccgagaaacaaggcttggagctggcagctgactgccac
ctaagcagaatagttcaggcaacaacactactgaccatggacaaatattccatgcaggac
gttcctaacattaacaatacctgcttcaagctgaattctctacagctgcaggctctgctc
cagaattaccactgtgccccagatgagccgtacattcctcctgacctgatagagaatgta
gtggcagtggccgagaacacggcagatgagcttgcccgcagtgacggccgtgaggtccag
ctggaggaggacccagatctgcagctgcctttcctcttgcccgaagacggctactcatgt
gatgtcgtccgcaacattcccaacggcttccaggagttcttggagcccctgtgtcagaga
ggctactgcaggctgacacctcaccctcgctctccaggcacctggaccatgtactttgaa
ggggccgactatgaaaatcacttttccactgacagcactgagttgcccatgccgaaggat
ccggaaattgtgaccgtgacactcaagaagcacaatggaatgggtctcagtattgtggct
gcaaagggtgctgggcaggagaagctgggaatctacgtcaaatctgtggtaaaaggagga
gcggctgatatagacggccgtcttgcagcaggagatcagctgctcagtgtagatggacgc
agcttagtgggcctgtcccaagaaagggctgcagaattgatgacacggacaggctcagta
gtaacactagaagtagcaaaacagggagcaatttaccatggattggccacgctgcttaac
caaccgtcccctatgatgcaaagagcttcagaccgtggccgtggctcaggaaaacccaga
ccaaagagtgaaggctttgagctctacaataactccgcacagaacggctcccctgagagt
ccacagacgtcatggggggagccccctgaaccaaagaaaacgtcaggagaggagagacta
cttaagaacagggccgaccaccgctctagtcctaatgttgccaaccaggctcagagtcca
ggaggaaagactgtttattcaggtggcccaacgtcaaaaatcacatccgtctcaactgga
aacctttgcactgatgaacagcagccctcgccacgacccgaagcgtatccaatccctacc
cagacctacacgagggattactttactttccctgcctccaaatcccaggacagaatgggc
cctggtcctgagcagcagtggcagaactatggggacagacccccaggccagcctgacgat
catcactccagcaatatgtccattcagcgagtaactcgctcgcaggaggagctctgtgac
gaccgagtggcttaccagccagagaggatgcggcaggaagagattgttcagatgcagcag
cgggagatggagtatcagcgggagcggggcaatggcgagcactggaaccatcaggtctcc
tcctctgtggagtccagcacatccagccaggaacacctcaactactcctcttcctcatcc
aaggcccccaaccacaagagcggtccgggtcgatggaagacaccagggcccactaactct
gcccctgtggctgtttcccagccaacccagtcggaccttctgcccccaccccctccccct
cctccagtatactacacaggcgactttgactcccaggctgacctgcctctccctccccct
ccccctggtggcgggcagcagcaggctatagctgccgccactgcagcagctgaccgcaag
aaacgtgacgagcaacagcgctggtacgagaaggaaaaggcacggctagaggacgagagg
gacaggaaacggagggagcaggacaggaagatgggccaggtccgcatccctcctggacca
ggagtccctcccaatctcaaccaccatcaccagcagcctccattgtcaccaatgccaatc
cagcaccagcagcaccaacacccaccaccacctatgcctctacagcagcagcagtaccac
ccccctcccatgatgccccagcagcctccctggattgaaaagccttccagtctgccccgg
gctccccctcccccccaagacacagtcatccgggagctgcttccccagcagcagccacgc
accatcgagcgccgggacctgcagtacattgtcagcaaggaggacctcacctctggggac
agcctgtcccctgacccctggaagcgggatgcccgggagaagatggagaagcagcagcag
ctgcacatcgtggacatgctcaacaaagagatccaagagctgcaggccaaaccggagcgc
actgccgaggagaacgaccggctgcgcaagctgatgctggagtggcagttccaaaagcgg
ctacaggagtcaaagcagaatgaggaggacgaggaggaggaagatgacgaggacgtggac
accatgcttatcatgcaacgcctggaggctgagaagagagcccggcagactgctgtccca
gcaatctctgttctagacttgttgcaggatgaggaacgcagacgcaagcagcagctggaa
gagatccgcaagcgggaggcagaagaatgggcgaaacaagaggaagagcgccgcaggaga
gaagaggagaggaaccgacgagaggcagaggagaagaggagacaggaagaggagtattac
aaccgcttggaagcagagaggcgcagacagcacgatgaggctgaacggaagctgctaaca
cctgacgagcctggtctgtacagacctcccctcccccgggactacgagctaccccctccc
cctccctcctcagctaacacacctccacccccgcctcagagaaacacctcttacctcaaa
acgcaggtcgtctcccctgacacagtgtacactgccaagtttgtttcatacaatgatgag
gaggaggactcaagcctagcaggtcaggttaagttctcggccaccagaaaatcctatggc
gaccttcctcctgctcccaagccgcagcctcaccagccatctgcccgcccatcccgcccg
gtctctgatgggatctttctttccaactcattccagctgccatcagccaatgccaacagt
actgcttttaaggcaggtccccctccccctcccaacaaacccagcttcaacccgtccggc
aactccaaaggatataattcgtacactggaactacaacagcggttgtaggatcacatgaa
gtttacagggacctgcgggataaacgtgtcaaaagtggtcaagatcaggatgattctttg
actggcgaagctccagagagtatgactttcaaggaacgccagcgattgttttcccaggga
caagatgtgtccaataaagtcaaggcatcgagaaaactgatggagttggagaacgaactc
aacacaaaataa
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