Polyodon spathula (Mississippi paddlefish): 121317163
Help
Entry
121317163 CDS
T07273
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121317163 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121317163 (taf5l)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121317163 (taf5l)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121317163 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
121317163 (taf5l)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121317163 (taf5l)
STAGA complex
121317163 (taf5l)
TFTC complex
121317163 (taf5l)
SAGA complex
121317163 (taf5l)
SLIK complex
121317163 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Ge1_WD40
WD_LRWD1
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
121317163
NCBI-ProteinID:
XP_041108746
LinkDB
All DBs
Position
6:37154828..37160826
Genome browser
AA seq
595 aa
AA seq
DB search
MKRVRTEQFQYTVAQYLKRRQYVESDGPPKGPKLSQTAEEMATNLTVQTESGCTNFVSAA
PCQADSQQYEIQFGQLRTFLTDTDVQWSREVTSVLYPLFVYLHLDMVHCGLKSSVDSFYS
RFHSMFLQDTDQKDIIEQLRTALTVQDISSNPKLRAFLDNKYVVHLTDEAYNYLLRYLQS
DNNTALCRVLASHIQVEVTSAQRTVYQLYGSGPSGMGGFSRRDASNNMEPGDVPASILQN
EAARNSLQECIKRVKDGPPTLTTVCFYAFQNTDQLLNSAEISANSKLLAAGFDNSCIKLW
SLRAQKLKAEPHQVDVSRINLACDVLDDETDDDEDSAGTEMKTLRGHCGPVYSTTFLTDS
SGLISCSEDTTIRYWNLGSFTNTALYQGHAYPVWDIDVSPCSLYFASGSHDRTARLWTFS
RTYPLRLYAGHLADVDCVKFHPNSNYIATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSL
AFSPNGKYLASAGEDQRLKLWDLASGALFKDLRGHTDNITSLSFSPDSSLIASASMDNSV
RVWDIRNTYCNAPVDGSSSELVGVYTRQVSNVLSVQFMACNLLLMTGTTQENQEH
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacgtacagagcagttccagtacacggttgctcagtacctcaagcgtcga
cagtatgtagaatcggacggtcccccgaaggggccgaaattgtctcagactgcagaggag
atggcaacaaacctcacagttcaaacagagtcaggttgtaccaattttgtgtctgctgcc
ccttgtcaggcagactcacagcagtatgaaatacagtttggacaattgcgaacttttctg
actgatacagatgtgcagtggagccgggaagtgacctcggtgctgtaccccctatttgtc
tacctccaccttgacatggtacactgtggcttgaaaagctcagtggacagcttttatagc
cgcttccatagcatgttcctgcaggacaccgaccagaaggacattatagaacagttacga
actgccctgacagtccaggatatctcatctaatccaaaacttagagccttccttgataat
aagtatgttgtccacctcactgatgaggcctacaactacctcctccgctacctccagagt
gacaacaacaccgctctctgtagggtgctggcttcccacattcaagtggaggttacttcc
gcccagcggactgtctatcaattgtatggtagtggccccagcggcatgggggggttttca
cgaagggatgccagcaataacatggagcctggggatgtgcctgctagcattctgcagaac
gaagctgcccgcaactcgttgcaagagtgtatcaaacgtgtgaaggatgggccacctacg
ctcaccactgtctgcttctacgcatttcaaaacacagaccaactgctcaattcagctgag
atctccgccaacagcaagctattggctgccggcttcgacaactcctgcatcaagctgtgg
agcctgcgggcccagaagctcaaggcagagccccaccaggtggacgtctcaagaatcaat
ttggcgtgcgacgtccttgatgatgagactgatgatgatgaagacagtgctggtactgaa
atgaaaaccctaagaggacactgtgggccggtgtacagtactacattccttacggacagc
tcagggctcatctcctgttctgaggacacaacaatcagatactggaatctcggcagtttt
actaacactgctttgtaccagggacatgcatacccagtgtgggacattgatgttagtccg
tgcagcctttattttgcaagtgggtcacatgacaggactgccaggctttggacgtttagt
cggacatacccattgaggctgtatgcgggtcacttggcagacgtagactgtgtcaagttc
catcccaactcaaattatatcgccacaggatccactgacaaaactgttcggctgtggagt
acacagcaagggaattccgtaagactgttcactggccaccgtggccctgttttatcactg
gccttttcacccaatgggaagtacctggcatcagcaggggaagaccagaggctaaaactc
tgggacttggcatcaggtgcgttatttaaagacttgagggggcataccgacaacatcaca
agcctctccttcagtcccgacagtagcttgattgcctctgcctccatggacaattctgtc
agggtatgggatatccgaaacacgtactgcaatgcacctgttgatggctcctccagtgag
ctagttggcgtttatacaagacaggttagtaatgtattgagcgtgcagtttatggcctgc
aacttgcttctaatgactggaactacacaggaaaaccaagaacattag
DBGET
integrated database retrieval system
