Polyodon spathula (Mississippi paddlefish): 121317564
Help
Entry
121317564 CDS
T07273
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121317564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121317564
Spliceosome [BR:
pspa03041
]
Complex C
Other components
Step II factors
121317564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
121317564
NCBI-ProteinID:
XP_041109574
LinkDB
All DBs
Position
6:71099182..71119355
Genome browser
AA seq
577 aa
AA seq
DB search
MSAAIASLEVYGSDSGSDSDGESRTSTDNASQDATAHLRPLGSEKTLSLQVLNSAPEVAV
KQDVETGVHLDPSLKEVMYNPTCDTLFAPEFGPMNPFKTQQMSAPRNMLSGYAEPAHLND
FMFEEQRRTFSTFGYALDPSLDNSHLTTGYIGAIEEAEKNKGLTVFEAGAKKMEKRKKVK
GSDASNIEGFLGPWAKYLDEKDVAKPSEEEQKELDEITAKRQKKGRNEEEAPADEKTILH
AKDMYDYQGRSYLHVPQDVGVNLRSADIPDKCYLPKKQIHVWSGHTKGVSAIRLFPVSGH
LLLSCSMDCKIKLWEVYNERRCLRTFIGHSKAVRDICFNNTGTQFLSAAYDRYLKLWDTE
TGHCISRFTNRKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDVRSGEVVQEYDRHLGAVN
TITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMD
NQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKL
YHRIKAHDKVCISALWHPHETSKVITCGWDAQIKLWD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgatcgcttctcttgaagtttacggcagcgattctggctctgattctgac
ggcgagtccagaaccagcaccgacaatgcaagccaggacgctacagcacaccttcgtcct
ttgggttcggagaaaacgctgtcgttgcaggtcctcaactccgctccggaggtggctgtg
aagcaagatgtggagaccggagtgcaccttgatccatctcttaaggaggtcatgtataac
cccacatgcgacaccttgtttgcccctgagtttggtccaatgaacccgttcaagacccag
cagatgtcagcccccagaaacatgttatctggttatgcagagcctgctcacctcaatgat
ttcatgtttgaggaacagaggagaaccttttcaaccttcggctatgccttggatccatcc
ttagacaacagtcacctaacaactggttacataggtgcaatagaagaggcagaaaagaat
aagggcctaacagtgtttgaagcaggcgcaaagaaaatggaaaagaggaagaaagttaaa
gggagcgatgcctctaacattgaagggttcttgggaccctgggctaagtacctggatgaa
aaagatgtggccaaaccctcagaagaagaacagaaggaattggatgagattactgccaag
agacagaagaaaggcagaaatgaagaggaggctcctgcagatgaaaaaacaatccttcac
gccaaagacatgtatgactaccaaggaaggtcatatctgcacgttccccaggacgtcggg
gtcaacctgcgctctgctgatatcccagacaaatgttacctgcccaaaaaacagatccat
gtatggtctggacatacaaagggtgtcagtgcaatcaggttgttcccagtttctggacac
ctgttgctatcctgttctatggactgcaaaatcaagctatgggaggtttacaacgaacga
agatgtttacgaacattcattggtcacagcaaagctgttcgtgacatctgctttaataac
acaggcactcagttcctcagtgcagcttatgatcgataccttaaactgtgggacacagaa
acaggacattgtatttcaagatttacaaaccggaaagtcccttactgtgtcaagttcaat
cctgatgaagacaagcaaagcctctttgtggctgggatgtctgataagaagattgtccag
tgggatgtacggtccggagaagtcgttcaagagtacgataggcatctgggagctgtcaac
accatcacattcgtggatgaaaacaggcgctttgtcagtacctctgacgacaagagcctt
cgtgtctgggaatgggacattcctgttgactttaagtacatagctgaaccgagtatgcat
tcaatgccagctgtaactctatctccaaacggtaagtggttggcctgtcagtcaatggac
aatcagatcctgatctttggagcccagaacaggttccgactgaacaagaagaaaatcttc
aagggtcacatggtagctggctatgcctgccaagtggatttttcaccagatatgagctac
gttgtttcaggagatgctgatggtaaactgaacatctgggactggaaaaccactaagctg
tatcaccgaatcaaagcccatgacaaagtgtgcattagtgcactctggcacccacacgaa
acctcaaaggttatcacgtgtggctgggatgctcagatcaagctctgggactag
DBGET
integrated database retrieval system
