Polyodon spathula (Mississippi paddlefish): 121317597
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Entry
121317597 CDS
T07273
Symbol
gabrr1
Name
(RefSeq) gamma-aminobutyric acid receptor subunit rho-1
KO
K05190
gamma-aminobutyric acid receptor subunit rho
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04080
Neuroactive ligand-receptor interaction
pspa04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121317597 (gabrr1)
04082 Neuroactive ligand signaling
121317597 (gabrr1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121317597 (gabrr1)
Ion channels [BR:
pspa04040
]
Ligand-gated channels
GABA-A
121317597 (gabrr1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Ig_GpJ_C
Motif
Other DBs
NCBI-GeneID:
121317597
NCBI-ProteinID:
XP_041109639
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Position
6:73410782..73433157
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AA seq
530 aa
AA seq
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MNLCITGHCYIVKGNEKVLKRAVKILLFTLATCEFDIWITYNWLSLSEAVGTMRFGVVLL
LCLWVLGAAGSTAEYKRHMHEGHRKGRAHRLRREACKDDEVGRHKKGSPILKRSPDVTKS
LLTKSEQLLRIDDHDFSMRPSFGGPAIPVGVDVQVESLDTISEVDMDFTMTLYLRHYWKD
ERLSFQSTNNLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVHPDGKVLYSL
RVTVTAMCNMDFSRFPLDTQSCSLEIESYAYTDEDLMLYWMKGNDSLKTDERISLSQFLI
QKFHTTTKLAFYSSTGWYNRLYITFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAV
PARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLST
VQERKERKMRDKSQLPCTCGPSHPQPMRMDPSYSEGDLNTNSYGMPGNGERQERIIVHLA
LGDRRPTSRRKGSRGYVSMWIDTHAIDKYSRVIFPGAYILFNIIYWSIYC
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgtgtataactgggcattgttatattgttaagggaaatgagaaggttctaaag
agggctgtaaagattttgttgttcaccttggctacttgtgaatttgacatttggattacc
tacaactggctatcactttctgaggctgttggcaccatgcgatttggtgttgtcttgctg
ctttgcttgtgggtgctgggggctgcaggaagcacagctgaatacaagaggcacatgcat
gaagggcacaggaaaggcagggctcacagactaagaagagaagcatgtaaagatgatgaa
gtaggaaggcataaaaagggcagccccatcctgaaaaggagtcctgatgtaacaaaatct
ctattgacaaaatcagagcagcttctccgaatcgatgaccacgatttctcaatgaggcct
agttttggagggcctgcaatcccagttggtgtggacgtacaggtagaaagccttgacacc
atttctgaagtggatatggacttcaccatgactctgtacctgaggcactactggaaggat
gagcggctgtccttccaaagcaccaacaacctcagcatgaccttcgatggcaggctggtg
aaaaagatctgggtccccgatatgtttttcgttcattcaaagagatcgttcatccacgac
acgacgacagacaatgtgatgctgcgcgttcacccagatgggaaagtgctctacagcctc
agggttacagttacagccatgtgcaacatggacttcagccgcttccctttggacacccag
agctgttcgctggagatcgagagctatgcctacactgacgaagatctaatgctgtactgg
atgaaaggcaatgactctcttaagacagacgaaaggatatctttgtcccagttcctcata
caaaagttccatacgactacaaagctagcattttacagcagtacaggttggtacaaccgt
ctgtacatcaccttcacgctccgacgacacatcttcttcttcctgctccagacctatttc
ccagccactctgatggtcatgctgtcctgggtgtccttctggattgaccgcagggctgtg
ccggctcgagtcccgttaggtatcaccacggtgctgaccatgtccaccatcatcactgga
gtcaatgcgtcgatgcccagggtctcctacatcaaggctgtggacatctacctgtgggtc
agttttgtgtttgtgttcctgtcggtgctggagtacgctgcagtgaactacttgagtact
gtgcaggagcgcaaagagaggaagatgagagacaagtcccagcttccctgtacctgtggt
ccgtcccacccgcagcccatgaggatggatcccagctacagtgaaggggatctcaacacc
aactcttatgggatgcctgggaatggggaaaggcaggaaaggattatagtgcatttggct
ctgggggacaggcgccccacaagcaggaggaaagggtcccgcggatacgtcagcatgtgg
attgacacgcacgccattgacaagtactctcgtgtgatctttcctggagcctacattctt
ttcaatataatatactggtccatttactgctag
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